Locus 1466

Sequence ID 2L_DroMel_CAF1
Location 3,882,567 – 3,882,660
Length 93
Max. P 0.585262
window2387

overview

Window 7

Location 3,882,567 – 3,882,660
Length 93
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 80.51
Mean single sequence MFE -18.98
Consensus MFE -13.48
Energy contribution -13.88
Covariance contribution 0.40
Combinations/Pair 1.10
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.10
SVM RNA-class probability 0.585262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3882567 93 - 22407834
CUUUUCGCCACCCGGAGAUCCUGAUCCUCCGCCAUCAUCAUCA---------------UCCUCAUCCUCAUCCACAUCCACAACGCCCGUUGUCGUCUGCGGCAAAUU
......(((....((((((..((((........))))..))).---------------))).............((..((((((....))))).)..)).)))..... ( -17.20)
>DroSec_CAF1 14736 87 - 1
CUUUUCGGCACCCGGGGAUCCUGAUCCUCCGCCAUCAUCAUCA---------------UCC------UCAUCCACAUCCACAACGCCCGUUGUCGUCUGCUGCAAAUU
.(((.(((((..(((((((..((((...........))))..)---------------)))------))..........(((((....))))).)..))))).))).. ( -19.40)
>DroSim_CAF1 14902 81 - 1
CUUUUCGGCACCCGGGGAUCCUGAUCCUCCGCCAUCAUCAUCA---------------------------UCCACAUCCACAACGCCCGUUGUCGUCUGCUGCAAAUU
.(((.(((((..(((((((....)))).)).............---------------------------.........(((((....))))).)..))))).))).. ( -17.60)
>DroEre_CAF1 14337 108 - 1
CUUUUCGGCACCCGGGGAUCCUGAUCCUUCGCCAUCAUCAUCAUCGUCCGCAUCCUCGUCCGCAUCCUCGUCCUCAUCCACAAACGCCGUUGUCGUCUGCUGCAAAUU
.....((((....((((((..((((........)))).......((..((......))..)).))))))((........))....))))((((.(....).))))... ( -16.80)
>DroYak_CAF1 16663 102 - 1
CUUUUCGGCACCCGGGGAUCCUGAUCCCUCGCCAUCGCCAUCAUC------AUCAUCAUCCGCAUCCGCAUCCGCAUCCACAACGCCCGUUGUCGUCUGCUGCAAAUU
......(((....((((((....)))))).)))...((.......------..........((....))....(((..((((((....))))).)..))).))..... ( -23.90)
>consensus
CUUUUCGGCACCCGGGGAUCCUGAUCCUCCGCCAUCAUCAUCA_______________UCC_CAUCCUCAUCCACAUCCACAACGCCCGUUGUCGUCUGCUGCAAAUU
.(((.(((((..(((((((....))))))..................................................(((((....))))).)..))))).))).. (-13.48 = -13.88 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:23 2006