Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,875,352 – 3,875,445 |
Length | 93 |
Max. P | 0.618016 |
Location | 3,875,352 – 3,875,445 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 76.87 |
Mean single sequence MFE | -17.48 |
Consensus MFE | -9.50 |
Energy contribution | -11.42 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.17 |
Mean z-score | -1.78 |
Structure conservation index | 0.54 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3875352 93 + 22407834 GACCCUUUUGAUUUAGAUAAUAUCAAUUUUAUAUUUUACUUC----------------------CAAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC ..(((((((((((...((((........))))..........----------------------....................((((........))))..))))))))))).. ( -13.20) >DroSec_CAF1 7732 103 + 1 GACUCUUUUGAUUUAGACAAUAUCAAUUUGAUAUUGUACUUCAACAG-------U--AC---ACCUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC ..(((((((((((((((.((((((.....))))))(((((.....))-------)--))---..............................)))))......)))))))))).. ( -19.60) >DroSim_CAF1 7822 103 + 1 GACCCUUUUGAUUUGGACAAUAUCAAUUUGAUAUUGUACUUCAACAG-------U--CC---ACCUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC ..(((((((((((.((((((((((.....))))))))..........-------.--..---......................((((........))))))))))))))))).. ( -24.70) >DroEre_CAF1 7160 107 + 1 C--UUUUUUCAUUC----UAUAUU-AUUUGAUAUUGUACUUCAGUAUC-AGCAUUUAACCGUCCGUAUUCCCCACAUAUACAGCCAAUAAUUUCUAAUUGCCAGUCGAGUGGGAC .--...........----......-..(((((((((.....)))))))-))...................(((((....((.(.((((........)))).).))...))))).. ( -16.30) >DroYak_CAF1 9458 115 + 1 CAACCUUUUUAUUUUGACAAUAUCAAUUUGAUUGUGUACUUUAAUAUGAAGCAUUUUACACUAUGUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGCGGGAU ...(((.......((((.....))))((((((((.(((((((.....))))...........((((((.........))))))...............))))))))))).))).. ( -13.60) >consensus GACCCUUUUGAUUUAGACAAUAUCAAUUUGAUAUUGUACUUCAACAG_______U__AC___ACCUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC ..(((((((((((...((((((((.....))))))))...............................................((((........))))..))))))))))).. ( -9.50 = -11.42 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:22 2006