| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,870,802 – 3,870,910 |
| Length | 108 |
| Max. P | 0.569874 |
| Location | 3,870,802 – 3,870,910 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -39.57 |
| Consensus MFE | -17.98 |
| Energy contribution | -18.29 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3870802 108 + 22407834 CACCUGAGUCUCGAUCAAAAUUCAGCCGCCGUGGUAAAUGAUUUGGCGAAAAGAUGCACCAUGCUCACCGAUCAGGUUCAAAUGCUGCAAAGCUCGAUUGGAACCAUC ....((.((..(((((..........(((((............)))))......((((.(((....(((.....)))....))).))))......)))))..)))).. ( -24.80) >DroVir_CAF1 25288 108 + 1 CAACUGUGCCUGGAUCAGAACUCGGCAGCCGUUGUAAAUGAUUUGGCGAAGCGUUGCACAAUGCUUACCGAUCAGGUGCAGCAGCUGCAGAGCUCGAUUGGCACUAUU .....(((((..((((.((.(((.(((((.((((((..(((((.((..(((((((....))))))).)))))))..)))))).))))).))).))))))))))).... ( -47.80) >DroWil_CAF1 20696 108 + 1 CAUGUGAGCCUCGAUCAUAACUCGGCGGCUGUGGUAAAUGAUUUGGCCAAGCGUUGCACAAUGCUGACCGAUCAAGUGCAACAGCUGCAGAGUUCGAUUGGCACCAUA .(((.(.(((..((((..(((((.((((((((.(((..(((((.((...((((((....))))))..)))))))..))).)))))))).))))).))))))).)))). ( -43.50) >DroMoj_CAF1 16518 108 + 1 CAAGUGUGCCUCGAUCAGAACUCGGCCGCUGUUGUCAAUGAUCUGGCUAAGCGUUGCACAAUGCUUACCGAUCAGGUGCAACAGCUGCAGAGCUCGAUCGGCACGAUU ....((((((..((((.((.(((.((.((((((((...(((((.((.((((((((....)))))))))))))))...)))))))).)).))).))))))))))))... ( -51.30) >DroAna_CAF1 17298 108 + 1 AACGUGAGCCUUGAUCAGAACUCUGCCUCGGUGGUUAAUGAUCUGGCGAAGCGAUGCACUCUGUUGACGGACCAGGUUCAAUCGCUGCAGAGCUCGAUUGGAACCAUU ..(((..(((..(((((.....(..(....)..)....))))).)))...)))......((((....))))...((((((((((..((...)).))))).)))))... ( -33.40) >DroPer_CAF1 13473 108 + 1 CCCGUGAGUCUUGAUCAUAACUCGGCCUCUGUGGUCAACGAUCUGGCCAAGCGCUGUACCAUGCUGACGGACCAGGUGCAGCAGCUGCGCAGCUCGAUCGGAACGAUU ..(((((((..(....)..))))((((.....))))..(((((.(((..(((((((((((.((.........)))))))))).))).....))).)))))..)))... ( -36.60) >consensus CACGUGAGCCUCGAUCAGAACUCGGCCGCUGUGGUAAAUGAUCUGGCGAAGCGUUGCACAAUGCUGACCGAUCAGGUGCAACAGCUGCAGAGCUCGAUUGGAACCAUU .......(((.............)))....(((((...(((((.(((..((((((((((................))))))).))).....))).)))))..))))). (-17.98 = -18.29 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:18 2006