Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,868,123 – 3,868,233 |
Length | 110 |
Max. P | 0.940437 |
Location | 3,868,123 – 3,868,233 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.56 |
Mean single sequence MFE | -45.78 |
Consensus MFE | -35.42 |
Energy contribution | -35.94 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.09 |
Mean z-score | -2.23 |
Structure conservation index | 0.77 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3868123 110 - 22407834 GUUACAAAAUUGAUGACUUCAUCGAGGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUUAGC-----CAGGACCUCGAAGCCCC-CGG----CCCG .........((((((....)))))).(((((.((.((((((((....))))))))(((((((((((((....))))))).......-----...))))))...))...-.))----))). ( -41.40) >DroSec_CAF1 4547 109 - 1 GUUACAAAAUUGAUGACUUCAUCG-GGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC-----CAGGACCUCGAAGCCCC-CGG----CCCG ...........((((....))))(-(((((...(.((((((((....))))))))(((((((((((((....))))))).......-----...)))))))..)))))-)..----.... ( -43.30) >DroSim_CAF1 4504 109 - 1 GUUACAAAAUUGAUGACUUCAUCG-GGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC-----CAGGACCUCGAAGACCC-CGG----CCCG ..........(((((....)))))-((((((..(.((((((((....))))))))(((((((((((((....))))))).......-----...)))))))..)))))-)..----.... ( -43.20) >DroEre_CAF1 4543 111 - 1 GUUACAAAAUUGAUGACUUCAUCG-GG-GGCUGGACUUUCCAAGAAGAUGGGGCGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC-----CAGGACCUCGCAGCCCCGCGCC--CCCCA ...........((((....))))(-((-((((((.....)))....(.((((((.(((((((((((((....))))))).......-----...))))))...))))))))))--))).. ( -52.80) >DroYak_CAF1 4579 118 - 1 GUUACAAAAUUGAUGACUUCAUCG-GGGGGCUGGACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGCCUUUACAGGACCUCGAAGCCCC-CGCCGAGUACA ..(((.....(((((....)))))-(((((((...((((((((....))))))))(((((((((((((....))))))).......((....))))))))..))))))-).....))).. ( -48.20) >consensus GUUACAAAAUUGAUGACUUCAUCG_GGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC_____CAGGACCUCGAAGCCCC_CGG____CCCG ...........((((....))))..((((((....((((((((....))))))))(((((((((((((....))))))).....(......)..))))))...))))).).......... (-35.42 = -35.94 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:14 2006