Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,865,134 – 3,865,236 |
Length | 102 |
Max. P | 0.645739 |
Location | 3,865,134 – 3,865,236 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.31 |
Mean single sequence MFE | -42.23 |
Consensus MFE | -28.23 |
Energy contribution | -28.32 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.25 |
Mean z-score | -1.62 |
Structure conservation index | 0.67 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3865134 102 - 22407834 GACAGACGCCUCCGAGUCCGUGGUGCGCACAGAUUCCUUCGAUGGUGUCUUUUGCGGCAGCAAUCGAGUGUGCUUGCUCUGGCGCGUCUCCGUGUUGUCCUC ...(((((((((.(((((.(((.....))).)))))....)).))))))).....(((((((...(((((((((......)))))).)))..)))))))... ( -37.60) >DroPse_CAF1 58774 102 - 1 AACCGAGGCCUCCGAGUCUACGGUGGCCAUCGACUCCUUGGAGGAUCUCUUCUCGGGCAGCAGGCGCGUGUGACGACUCUGAUGCGUCUCGUUGCCAUCCUC ....((((((((((((....((((....))))....)))))))).))))......((((((((((((((..((....))..)))))))).))))))...... ( -42.80) >DroSec_CAF1 1545 102 - 1 GACAGACGCCUCCGAGUCCGUGGUGCGCACAGAUUCCUUCGAUGGGGUCUUUUGCGGCAGCAGGCGAGUGUGCUUGCUCUGGCGCGUUUCCGUGUUGUCCUC (((((.((((..((....)).)))))(((((((((((......)))))))...(((.(((..((((((....))))))))).)))......))))))))... ( -37.90) >DroEre_CAF1 1547 102 - 1 AACAGACGCCUCCGAGUCCGUGGUGCGCACAGACUCCUUUGACGGCGUCUUCUGCGGCAGCAGGCGAGUGUGCUUGCUUUGGCGCGUCUCCGUGUUGUCCUC ...(((((((((.(((((.(((.....))).)))))....)).))))))).....(((((((.(.(((((((((......)))))).)))).)))))))... ( -44.20) >DroYak_CAF1 1586 102 - 1 AACAGACGCCUCCGAGUCUGUGGUGCGCACGGACUCCUUUGAUGGCGUCUUUUGCGGCAGCAGGCGAGUGUGCUUGCUUUGGCGCGUCUCCGUGUUGUCCUC ...(((((((((.(((((((((.....)))))))))....)).))))))).....(((((((.(.(((((((((......)))))).)))).)))))))... ( -48.10) >DroPer_CAF1 58425 102 - 1 AACCGAGGCCUCCGAGUCUACGGUGGCCAUCGACUCCUUGGAGGAUCUCUUCUCGGGCAGCAGGCGCGUGUGACGACUCUGAUGCGUCUCGUUGCCAUCCUC ....((((((((((((....((((....))))....)))))))).))))......((((((((((((((..((....))..)))))))).))))))...... ( -42.80) >consensus AACAGACGCCUCCGAGUCCGUGGUGCGCACAGACUCCUUCGAUGGUGUCUUCUGCGGCAGCAGGCGAGUGUGCUUGCUCUGGCGCGUCUCCGUGUUGUCCUC ....((((((((.(((((.(((.....))).)))))....)).))))))......(((((((...(((((((((......)))))).)))..)))))))... (-28.23 = -28.32 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:10 2006