Locus 1455

Sequence ID	2L_DroMel_CAF1
Location	3,853,980 – 3,854,080
Length	100
Max. P	0.816176

overview

Window 8

Location	3,853,980 – 3,854,080
Length	100
Sequences	4
Columns	106
Reading direction	reverse
Mean pairwise identity	88.28
Mean single sequence MFE	-25.27
Consensus MFE	-22.15
Energy contribution	-22.40
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-1.68
Structure conservation index	0.88
SVM decision value	0.66
SVM RNA-class probability	0.816176
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3853980 100 - 22407834
UUG--UCAAAGGGGCGGGGGGAGUGGCGAUCAUCCUCAUCAGGAAGGGAGUCCACUCAACUUAACUCUCACACCAAAAAAAA---AG-GGAAAAAAGAAAACGAGG
.((--(...((((..(((..(((((((..((.((((....)))).))..).))))))..)))..)))).)))((........---.)-)................. ( -25.00)
>DroSec_CAF1 42582 102 - 1
UUG--GCAAAGGGGCGGGGGGAGUGGCGAUCAUCCUCAUCAGGAAGGGAGUCCACUCAACUUAACUCGCACACAAAAACCAAA--AGAGAAAAAAUGAAAACGAGG
(((--(.....(.(((((..(((((((..((.((((....)))).))..).)))))).......)))))...).....)))).--..................... ( -26.00)
>DroSim_CAF1 41854 104 - 1
UUG--GCAAAGGGGCGGGGGGAGUGGCGAUCAUCCUCAUCAGGAAGGGAGUCCACUCAACUUAACUCUCACACAAAAACCAAAUCAGAAAAAAAAUGAAAACGAGG
(((--....((((..(((..(((((((..((.((((....)))).))..).))))))..)))..))))....)))............................... ( -25.80)
>DroYak_CAF1 44853 102 - 1
GUGUGGAAAAGGGGCGGGGGGAGUGGCGAUCAUCCUCAUCAGUAAGGGAGUCCACUCAACUUAACUCUCACAAAAAAAUUAAA---A-AAAAAAGAGGAAACGAGG
.((((....((((..(((..((((((....(..(((........)))..).))))))..)))..))))))))...........---.-........(....).... ( -24.30)
>consensus
UUG__GCAAAGGGGCGGGGGGAGUGGCGAUCAUCCUCAUCAGGAAGGGAGUCCACUCAACUUAACUCUCACACAAAAACCAAA__AG_AAAAAAAAGAAAACGAGG
..........(((..(((..(((((((..((.((((....)))).))..).))))))..)))..)))....................................... (-22.15 = -22.40 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:05 2006