Locus 1453

Sequence ID 2L_DroMel_CAF1
Location 3,851,933 – 3,852,025
Length 92
Max. P 0.743843
window2365

overview

Window 5

Location 3,851,933 – 3,852,025
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 94.71
Mean single sequence MFE -31.43
Consensus MFE -26.74
Energy contribution -26.77
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.77
Structure conservation index 0.85
SVM decision value 0.46
SVM RNA-class probability 0.743843
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3851933 92 + 22407834
GAGCUGGGGCACUGAAAAGCAGUUGGAAGCCGCUGCUGUCCGUGGUGAUAAUGGGACAAAUGUCGGUGGAGAAAUAACCCGGCUUAAUCCCC
((((((((.((((((..((((((.(....).))))))((((............)))).....)))))).(....)..))))))))....... ( -33.40)
>DroSec_CAF1 40608 92 + 1
GAGCUGGGGCAUUGAAAAGCAGUUGGAAGCCGCUGCUGUCCGUGGUGAUAAUGGGACAAAUGUCGGUGGAGAAAUAACCCGGCUUAAUCCCC
((((((((.((((((..((((((.(....).))))))((((............)))).....)))))).(....)..))))))))....... ( -31.00)
>DroSim_CAF1 39887 92 + 1
GAGCUGGGGCAUUGAAAAGCAGUUGGAAGCCGCUGCUGUCCGUGGUGAUAAUGGGACAAAUGUCGGUGGAGAAAUAACCCGGCUUAAUCCCC
((((((((.((((((..((((((.(....).))))))((((............)))).....)))))).(....)..))))))))....... ( -31.00)
>DroEre_CAF1 45777 92 + 1
GAGCUGGGGCCUGGAAAAGCAGUUGGAAGCCGCUGCUGUCCGUGGUGAUAAUGGGACAAAUGUCGGUGGAGAAAUAACCCGGCUUAAUCCCC
(((((((((((((((..((((((.(....).)))))).)))).)))........(((....))).............))))))))....... ( -33.80)
>DroYak_CAF1 42704 92 + 1
GAGCUGGGGCAUUGAAAAGCAGUUGGAAGCCGCUGCUGUCCGUGGUGAUAAUGGGACAAAUGUCGGUGGAGAAAUAACCCGGCUUAAUCCCC
((((((((.((((((..((((((.(....).))))))((((............)))).....)))))).(....)..))))))))....... ( -31.00)
>DroAna_CAF1 41239 87 + 1
GAGCGGGGGC--UG-GAAGCGGUUGGAAGCCGCUGCUGUCUGGGGUGAUAAUGGGACAAAUGUCGGUGGAGAAAUAACCCGGCUUAAGUC--
((((.(((((--((-(.((((((.....))))))..(((((.(........).)))))....)))))..(....)..))).)))).....-- ( -28.40)
>consensus
GAGCUGGGGCAUUGAAAAGCAGUUGGAAGCCGCUGCUGUCCGUGGUGAUAAUGGGACAAAUGUCGGUGGAGAAAUAACCCGGCUUAAUCCCC
((((((((((........)).........((((((((((((............)))))...).))))))........))))))))....... (-26.74 = -26.77 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:02 2006