Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,849,875 – 3,849,973 |
Length | 98 |
Max. P | 0.788063 |
Location | 3,849,875 – 3,849,973 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.14 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -11.32 |
Energy contribution | -12.10 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.05 |
Mean z-score | -2.45 |
Structure conservation index | 0.57 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3849875 98 + 22407834 AAUUCCAAAAAUAUAGAUAUGUUAUAUAUUUAUAUAUGUCUUAUAUUUUUCUUCCAGUGCUGCAAGUGCCAUAUUUUCAUUUCUGACUGUAAAUGUCA ......((((((((((((((((.(((....)))))))))).)))))))))......(..(.....)..)...............(((.......))). ( -14.70) >DroSec_CAF1 38570 86 + 1 A-UUCC--AAAUAUAAAUAAGUUAUAUGGUUAUCUGUGU---------UUUUUCCAGUGUUGCAAGUGCCAUUCUGGCAUUUGUGACUGUAAAUGUCA .-....--(((((((.((((.(.....).)))).)))))---------))........((..((((((((.....))))))))..))........... ( -21.00) >DroSim_CAF1 37836 86 + 1 A-CUAC--AUAUAUAAAUAAGUUAUAUGGUUAUAUGUGU---------UUUUUCCAGUGUUGCAAGUGCCAUUCUGGCAUUUGUGACUGUAAAUGUCA .-..((--((((((((...(......)..))))))))))---------..........((..((((((((.....))))))))..))........... ( -23.70) >consensus A_UUCC__AAAUAUAAAUAAGUUAUAUGGUUAUAUGUGU_________UUUUUCCAGUGUUGCAAGUGCCAUUCUGGCAUUUGUGACUGUAAAUGUCA ..........((((((.....))))))...........................((((..((((((((((.....))))))))))))))......... (-11.32 = -12.10 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:01 2006