Locus 1450

Sequence ID 2L_DroMel_CAF1
Location 3,847,088 – 3,847,186
Length 98
Max. P 0.854898
window2360

overview

Window 0

Location 3,847,088 – 3,847,186
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 78.98
Mean single sequence MFE -24.00
Consensus MFE -13.94
Energy contribution -14.98
Covariance contribution 1.04
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.58
SVM decision value 0.80
SVM RNA-class probability 0.854898
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3847088 98 + 22407834
CAAGUUGACAGAAGUUUGGCGAAAAGAACAUUUCAACUGUGAGUGGAUGAGUGGAAGCCCGGCUUCAAUUUAUCAUAAGCUUAUCAUGAGAAUACAUA
..((((((..((.((((........)))).))))))))((((((.(((((((.(((((...))))).)))))))....)))))).............. ( -22.30)
>DroSec_CAF1 35848 98 + 1
CAAGUUGACAGAAGUUUGGCGAAAAGAACUUUUCAACUGUGAGUGGAUGAGUGCAAGUCCGGCUUGAAUGGAUCAUAAGCUUAUAAUGAGAAUGCAUA
..((((((..(((((((........)))))))))))))((((((..((((...((((.....))))......))))..)))))).............. ( -23.20)
>DroSim_CAF1 35149 98 + 1
CGAGUUGACAGAAGUUUGGCGAAAAGAACUUUUCAACUGUGAGUGGAUGAGUGGAAGUCCGGCUUGAAUGGAUCAUAAGCUUAUAAUGAGAAUGCAUC
..((((((..(((((((........)))))))))))))((((((..((((.......((((.......))))))))..)))))).............. ( -20.51)
>DroEre_CAF1 40803 79 + 1
CAAGUUGACAGAAGUUCUGUGAACAGAACUUUUCAACUAUGAGUGGAUGGGAUGAAGCCCGUCU---AUGUAUCAUAAACAU----------------
...(((((..(((((((((....))))))))))))))((((((((((((((......)))))))---))...))))).....---------------- ( -32.30)
>DroYak_CAF1 37780 98 + 1
CAAGUUGACAGAAGUUCUGUGAAGAGAACUUUUCAACUCUGAGUGAAAGAGCUGAAGAGCGUCUUGAAUGUAUCAUAAGCCUAUAAUUGGAAUACUUA
..((((((..((((((((......)))))))))))))).((((((.(((((((....))).))))..............((.......))..)))))) ( -21.70)
>consensus
CAAGUUGACAGAAGUUUGGCGAAAAGAACUUUUCAACUGUGAGUGGAUGAGUGGAAGCCCGGCUUGAAUGUAUCAUAAGCUUAUAAUGAGAAUACAUA
..((((((..(((((((........)))))))))))))((((((..((((....(((.....))).......))))..)))))).............. (-13.94 = -14.98 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:57 2006