Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 433,566 – 433,664 |
Length | 98 |
Max. P | 0.994258 |
Location | 433,566 – 433,664 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.12 |
Mean single sequence MFE | -22.20 |
Consensus MFE | -21.30 |
Energy contribution | -21.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.96 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 433566 98 - 22407834 AAGAUACAAAAACAAAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCAUAAUACCGUAGAAAAAUUAGCAGU .........................(((.(((((..((((((((........))))))))..)).))).))).......................... ( -21.30) >DroSec_CAF1 11008 94 - 1 AAGAUACAAAA----AAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCAUAAUACCGUAGAAAAAUUAGCAGU ...........----..........(((.(((((..((((((((........))))))))..)).))).))).......................... ( -21.30) >DroSim_CAF1 10060 95 - 1 AAGAUACAAAA---AAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCGUAAUACCGUAGAAAAAUUAGCAGU ...........---........((.(((.(((((..((((((((........))))))))..)).))).))).))....................... ( -22.80) >DroEre_CAF1 11065 97 - 1 AGA-UACAAAAACAAAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGAAGGCGUGCGAAACUAUGCUGCCGUAAUACCCUAGAAAAAUUAGCAGC ...-..................((.(((.(((((..((((((((........))))))))..)).))).))).))....................... ( -22.80) >DroYak_CAF1 10640 98 - 1 AAAGUACAACAACAAUAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUGGAAGGCGUGCGAAACUAUGCUGCCGUAAUACCCUAGAAAAAUUAGCCGU ......................((.(((.(((((..((((((((........))))))))..)).))).))).))....................... ( -22.80) >consensus AAGAUACAAAAACAAAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCGUAAUACCGUAGAAAAAUUAGCAGU .........................(((.(((((..((((((((........))))))))..)).))).))).......................... (-21.30 = -21.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:23 2006