| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,845,417 – 3,845,512 |
| Length | 95 |
| Max. P | 0.853010 |
| Location | 3,845,417 – 3,845,512 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 85.13 |
| Mean single sequence MFE | -36.14 |
| Consensus MFE | -30.37 |
| Energy contribution | -30.23 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3845417 95 + 22407834 CUGUACAUCCCGGGCACCCU-UUAAAUA------------------UAUUUUCGAGCCCGGCAUUUAGGCUGGGCUGUCAUCGCAGCCAUUGUUGGAAGCCAGCCGCCGCAGCC ((((.....((((((.....-.......------------------.........))))))......(((..((((((....))))))...(((((...))))).))))))).. ( -32.30) >DroSec_CAF1 34219 95 + 1 CUGUGCAUCCCGGGCACCCU-UUAAAUA------------------UAUUUUCGAGCCCGGCAUUUAGGCUGGGCUGUCAUCGCAGCCAUUGUUGGAAGCCAGCCGCCGCAGCC ((((((...((((((.....-.......------------------.........))))))......(((((((((((....))))))...((.....)))))))).))))).. ( -33.80) >DroSim_CAF1 33525 95 + 1 CUGUGCAUCCCGGGCACCCU-UUAAAUA------------------UAUUUCCGAGCCCGGCAUUUAGGCUGGGCUGUCAUCGCAGCCAUUGUUGGAAGCCAGCCGCCGCAGCC ((((((...((((((.....-.......------------------.........))))))......(((((((((((....))))))...((.....)))))))).))))).. ( -33.80) >DroEre_CAF1 39151 114 + 1 CUGUGCAUACCGGGCACCCUUUUAAAUAUACAUGUACUCGUAUAUAUAUUUUCCUGCCCGGCAUUUAGGCUGGGCUGUCAUCGCAGCCAUUGUUGGAAGCCAGCCGCCGCAGCC ((((((...(((((((......((.((((((........)))))).))......)))))))......(((((((((((....))))))...((.....)))))))).))))).. ( -41.00) >DroYak_CAF1 36035 105 + 1 CUGUGCAUCCCGGGCACCCU-UUAAAUAUAUAUGU--------AUGUAUUUUCCAGCCCGGCAUUUAGGCUGGGCUGUCAUCGCAGCCAUUGUUGGCAGCCAGCCGCCGCAGCC ((((((...((((((.....-..((((((((....--------))))))))....))))))......((((((.((((((..((((...))))))))))))))))).))))).. ( -41.60) >DroAna_CAF1 35445 89 + 1 CUGAAUAUCCUGGGCACCCU-UU------------------------AUUUUCCGGCCCGGCAUUUAGGCUGGGCUGUCAUCGCAGCCAUUGUUGAGCGGCAGCCGCCGCAGCC ((((((...((((((.....-..------------------------........)))))).))))))(((.((((((....))))))........(((((....)))))))). ( -34.36) >consensus CUGUGCAUCCCGGGCACCCU_UUAAAUA__________________UAUUUUCCAGCCCGGCAUUUAGGCUGGGCUGUCAUCGCAGCCAUUGUUGGAAGCCAGCCGCCGCAGCC .........((((((........................................))))))......(((((((((((....))))))...((((.....)))).....))))) (-30.37 = -30.23 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:53 2006