Locus 1447

Sequence ID 2L_DroMel_CAF1
Location 3,842,578 – 3,842,697
Length 119
Max. P 0.590986
window2354

overview

Window 4

Location 3,842,578 – 3,842,697
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.84
Mean single sequence MFE -30.52
Consensus MFE -26.38
Energy contribution -26.58
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -1.26
Structure conservation index 0.86
SVM decision value 0.12
SVM RNA-class probability 0.590986
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3842578 119 + 22407834
CAAGUAAGGAUAAUAUUUUCAUAGGCAAAACAAUUGUGGUUGUGCAAGGAAGUGACUUUUGGG-AACGGGAGGCACUUGCAGCUGCCCAAGUAUAUCCACCAUAUCCCAUAUCCUUUUUC
.....(((((((...........(......)....((((.(((((..(((((((.((((((..-..)))))).)))))((....))))..))))).)))).........))))))).... ( -29.90)
>DroSec_CAF1 31333 117 + 1
CAAGUAAGGAUAAUAUUUUCAUAGGUAAAACAAUUGUGGUUGUGCAAGGAAGUGACUUUUGGG-AACGGGAGGCACUUGCAGCUGCCCAAGUAUAUCCACA--AUCCCAUAUCCUUUUUC
.....(((((((.(((((....))))).....(((((((.(((((..(((((((.((((((..-..)))))).)))))((....))))..))))).)))))--))....))))))).... ( -33.80)
>DroSim_CAF1 30687 117 + 1
CAAGUAAGGAUAAUAUUUUCAUAGGCAAAACAAUUGUGGUUGUGCAAGGAAGUGACUUUUGGG-AACGGGAGGCACUUGCAGCUGCCCAAGUAUAUCCACA--AUCCCAUAUCCUUUUUC
.....(((((((...........(......).(((((((.(((((..(((((((.((((((..-..)))))).)))))((....))))..))))).)))))--))....))))))).... ( -33.10)
>DroEre_CAF1 36088 117 + 1
CAAGCAGGGAUAAUAUUUUCAUAGGCAAAACAAUUGUGGUUGUGCAAGGAAGUGACUUUUGGG-AACGCUAGGCACUUGCAGCUGCCCAAGUAUAUCCUCA--AUCCCAUGUCCUUUUUC
...((((((((.............(((.(((.......))).))).((((.(((...((((((-...(((..((....)))))..))))))))).))))..--))))).)))........ ( -27.90)
>DroYak_CAF1 32906 118 + 1
CAAGUAAGGAUAAUAUUUUCAUAGGCAAAACAAUUGCGGUUGUGCAAGGAAGUGACUUUUGGGUAACGAGAGGCACUUGCAGCUGCCCAAGUAUAUUCUCA--AUUCCAUAUCCUUUUUC
.....(((((((............(((.(((.......))).)))..((((.(((..((((((((.(....)((....))...)))))))).......)))--.)))).))))))).... ( -27.90)
>consensus
CAAGUAAGGAUAAUAUUUUCAUAGGCAAAACAAUUGUGGUUGUGCAAGGAAGUGACUUUUGGG_AACGGGAGGCACUUGCAGCUGCCCAAGUAUAUCCACA__AUCCCAUAUCCUUUUUC
.....(((((((...........(......)....((((.(((((..(((((((.((((((.....)))))).)))))((....))))..))))).)))).........))))))).... (-26.38 = -26.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:52 2006