Locus 1446

Sequence ID 2L_DroMel_CAF1
Location 3,841,901 – 3,841,993
Length 92
Max. P 0.514460
window2353

overview

Window 3

Location 3,841,901 – 3,841,993
Length 92
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 85.18
Mean single sequence MFE -19.88
Consensus MFE -13.92
Energy contribution -15.28
Covariance contribution 1.36
Combinations/Pair 1.20
Mean z-score -1.61
Structure conservation index 0.70
SVM decision value -0.04
SVM RNA-class probability 0.514460
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3841901 92 + 22407834
AAUUUUGAGGUGUGUGAAAAAUAUACCUCAGUAUAUUAAUUACAGGUCGUGAAUGGUAUGAUGAUAUUCAAUAAAUUUAGACUGAAU-UA----AAU
....(((((((((((.....)))))))))))....((((((...((((.(((((....(((......)))....))))))))).)))-))----).. ( -24.30)
>DroSec_CAF1 30669 96 + 1
AGUUGUGAGGUGGGUGAGAAAAAUACCUCAGUAUAUUAAUUACAGGUCGUGAAUGGUAUGAUGAUAUUCAAUAAAUUCAGACUGAGU-UAUUGGAUU
.....(((((((..(.....)..))))))).(((((((.((((.....)))).))))))).....(((((((((.(((.....))))-)))))))). ( -21.40)
>DroSim_CAF1 30001 96 + 1
AGUUGUGAGGUGGGUGAAAAAAAUACCUCAGUAUAUUAAUUACAGGUCGUGAAUGGUAUGAUGAUAUUCAAUAAAUUCAGUCUGAGU-UAUUGGAUU
.....(((((((..(....)...))))))).(((((((.((((.....)))).))))))).....(((((((((.(((.....))))-)))))))). ( -21.70)
>DroEre_CAF1 35391 95 + 1
AGCUUUGAAGUGGGUGCA--AAAUACGUCAGUAUAUUAAUUACAGGUCGUGAACGGUGUGAUGAUAUUCCAUAAAUGCAGACGGAGUUUAUUGAAUU
(((((.....((..((((--..((((....))))....((((((..(((....))))))))).............))))..)))))))......... ( -14.50)
>DroYak_CAF1 32238 95 + 1
AGUUUUGAGGUGGGUGAA--AUAUACUUCAAUAUAUUAAUUACAGGUCGUGAAAGGUAUGAUGAUAAUCCAUAAAUUCAAACACAGUUUAUGGGAUU
....((((((((......--...))))))))((((((..((((.....))))..)))))).......((((((((((.......))))))))))... ( -17.50)
>consensus
AGUUUUGAGGUGGGUGAAAAAAAUACCUCAGUAUAUUAAUUACAGGUCGUGAAUGGUAUGAUGAUAUUCAAUAAAUUCAGACUGAGU_UAUUGGAUU
.....(((((((..(.....)..))))))).(((((((.((((.....)))).)))))))......(((((((.((((.....)))).))))))).. (-13.92 = -15.28 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:51 2006