Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,838,497 – 3,838,611 |
Length | 114 |
Max. P | 0.967728 |
Location | 3,838,497 – 3,838,611 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.04 |
Mean single sequence MFE | -44.64 |
Consensus MFE | -16.30 |
Energy contribution | -18.22 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.14 |
Mean z-score | -2.24 |
Structure conservation index | 0.37 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3838497 114 - 22407834 GAGCUACAUAUGCUGCUUCU----CAAGCCAAAGAAUCCUCCGAUUCUUCUCGCC-AGAAUCUUCAGCUAUUGCGGGAGACUACGGUGACGGGUUUGUGAAGAGGCUGUGGCGAGGGUC ..((((((...(((.((((.----((((((.(((((((....))))))).(((((-..(.(((((.((....)).))))).)..)))))..)))))).)))).)))))))))....... ( -44.00) >DroSec_CAF1 27365 114 - 1 GAGCUACAUAUGCUGCUCCU----CAAGCCAAAGAAUCAUACGAUUCUUCUCGCC-AGAAUCUUCAGCUAUUGCGGGAGACUACGGUGACAGGUUUGAUGAGGGGCUGUGGCGAGGGUC ..((((((...(((.(((.(----((((((.(((((((....))))))).(((((-..(.(((((.((....)).))))).)..)))))..))))))).))).)))))))))....... ( -47.00) >DroEre_CAF1 31959 99 - 1 GAGCUACAGAUGCUG-------------------AAUCGAAGGACUCUUCUGUCC-AGAAUCUUCAGCUGUUGCGUGAGACCACGGUGACGGGUUUGAUGAGGGGCUGUGGCGAGGGUC ..(((((((..((((-------------------((((...((((......))))-.))...)))))).....(((.(((((.((....))))))).))).....)))))))....... ( -38.30) >DroYak_CAF1 28728 114 - 1 GAGCUACAGAUGCUGCUCCU----CAAGCCAAAGAAUCGCUGGAUUCUUCUGUCC-AGAAUCUUCAGCUGUUGCGGGACACCACAGUGACGGGCUUAAUGAGGGGCUGUGGCGAGGGAC ..((((((......((((((----((((((...(((...((((((......))))-))....))).(((((...((....)))))))....))))...))))))))))))))....... ( -41.80) >DroAna_CAF1 28650 115 - 1 AAGCUACAGG--CUCCACCCUGGCCCAGCCC--CAAUCAGACAGAUCUGGCGGCCGGGGGGCUUCAGCUGUUGCGAGACACAACUGUGACGGGUUUGAUGAGGGCCUGGGGCGAGGGAC .(((.....)--))...((((.((((.((((--..(((((((....((((.((((....))))))))((((..(.((......)))..)))))))))))..))))...)))).)))).. ( -52.10) >consensus GAGCUACAGAUGCUGCUCCU____CAAGCCAAAGAAUCAUACGAUUCUUCUGGCC_AGAAUCUUCAGCUGUUGCGGGAGACCACGGUGACGGGUUUGAUGAGGGGCUGUGGCGAGGGUC ..(((((((.(.((............................((((((........)))))).....((((..(.(.......).)..))))........)).).)))))))....... (-16.30 = -18.22 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:48 2006