Locus 1441

Sequence ID 2L_DroMel_CAF1
Location 3,833,802 – 3,833,899
Length 97
Max. P 0.538653
window2346

overview

Window 6

Location 3,833,802 – 3,833,899
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 91.55
Mean single sequence MFE -29.43
Consensus MFE -24.35
Energy contribution -25.74
Covariance contribution 1.39
Combinations/Pair 1.06
Mean z-score -1.78
Structure conservation index 0.83
SVM decision value 0.01
SVM RNA-class probability 0.538653
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3833802 97 - 22407834
CAAGGAUUAGAUCGAUCCUCGCUCGGAACGAGGACUUAGCUUAGCGCGUAUUAAUCUCAUUUCGUGGACCUCAAGCUGUGUCCUCCUCGAUGUCCUU
.((((((...((((((((......)))..((((((.((((((((((((..............))))...)).)))))).)))))).))))))))))) ( -31.14)
>DroSec_CAF1 22696 97 - 1
CAAGGAUUAGAUCGAUCCUCGCUCGGAACGAAGACUUAGCUUAGCGCGUAUUAAUCUCAUUUCGUGGACCUCAAGCUGUGUCCUCCUCGAUGUCCUU
.((((((...((((((((......)))..((.(((.((((((((((((..............))))...)).)))))).))).)).))))))))))) ( -24.64)
>DroSim_CAF1 22488 97 - 1
CAAGGAUUAGAUCGAUCCUCGCUGGGAACGAGGACUUAGCUUAGCGCGUAUUAAUCUCAUUUCGUGGACCUCAAGCUGUGUCCUCCUCGAUGUCCUU
.((((((...(((((((((....))))..((((((.((((((((((((..............))))...)).)))))).)))))).))))))))))) ( -31.64)
>DroEre_CAF1 27193 97 - 1
CAAGGAUUAGAUCGAUCCAGGCUCGGAACGAGGACUUAGCUUAGCGCGUAUUAAUCUCAUUUCGUGGACCUCAAGCUGUGUCCUCCUCGAUGUCCUU
.((((((...((((((((......)))..((((((.((((((((((((..............))))...)).)))))).)))))).))))))))))) ( -31.24)
>DroYak_CAF1 24026 97 - 1
CAAGGAUUAGAUCGAUCCUGGCUCGGAACGAGGACUUAGCUUAGCGCGUAUUAAUCUCAUUUCGUGGACCUCAAGCUGUGUCCUCCUCGAUGUCCUG
..(((((...((((((((......)))..((((((.((((((((((((..............))))...)).)))))).)))))).)))))))))). ( -30.94)
>DroAna_CAF1 23908 91 - 1
CAAGGAUUAAAUCGAUCCU----UGGAGC--GGACUAAGCUUAGCGCGUAUUAAUCUCAUUUCGUGGACUUCAAGCUGUGCUCUCUGGCUAGUCCUG
((((((((.....))))))----))....--((((((.(((.(((((((.....((.(((...)))))......)).)))))....))))))))).. ( -27.00)
>consensus
CAAGGAUUAGAUCGAUCCUCGCUCGGAACGAGGACUUAGCUUAGCGCGUAUUAAUCUCAUUUCGUGGACCUCAAGCUGUGUCCUCCUCGAUGUCCUU
..(((((...((((((((......)))..((((((.((((((((((((..............))))...)).)))))).)))))).)))))))))). (-24.35 = -25.74 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006