Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,830,960 – 3,831,067 |
Length | 107 |
Max. P | 0.559365 |
Location | 3,830,960 – 3,831,067 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -34.58 |
Consensus MFE | -26.38 |
Energy contribution | -27.54 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.53 |
Structure conservation index | 0.76 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3830960 107 + 22407834 G------GGGUUAAGUUAGCUCCUCAUGUUAUUCUCCAGCUGGAUGUUGCGUCCAUCUGUGCCAAAGAUGCAGAGAUAUUGGGGAAAACGACAGCUUGCAUGAUCAGUUGGCA .------.......(((((((..((((((..((((((((..(((((...)))))((((.(((.......))).)))).))))))))...........))))))..))))))). ( -32.32) >DroSec_CAF1 19802 107 + 1 G------GGGUUAAGUUAGCUCCUCAUGUUUUGCUCGAUCUGGAUGUUGGGUCCUUCUGUGCCAAAGAGGCAGAGAUAUUGGGGAAAACGACAGCUUGCAUGAUCAGUUGGCA .------.......(((((((..((((((...((((......))(((((..(((((((.((((.....)))).))).....))))...)))))))..))))))..))))))). ( -35.40) >DroSim_CAF1 20916 107 + 1 G------GGGUUAAGUUAGCUCCUCAUGCUUUGCUCGAUCUGGAUGUUGGGUCCAUCUGUGCCAAAGAGGCAGAGAUAUUGGGGAAAACGACAGCUUGCAUGAUCAGUUGGCA .------.......(((((((..((((((...((((......))(((((..(((((((.((((.....)))).)))).....)))...)))))))..))))))..))))))). ( -36.50) >DroEre_CAF1 24368 106 + 1 G------GGGUUAAGUUAGCUCAUCAUGUUUUUCUUGAUCUGGAUGUUGGGCCCAUCUGUGCCAAAGAUGCAGAGAUAUCGGGGAAA-AGACAGCUCGCAUGAUCAGUUGGCA .------.......(((((((.((((((((((((((((((((.((.((.(((.(....).))).)).)).))))....)))))))))-.((....))))))))).))))))). ( -33.10) >DroYak_CAF1 20445 113 + 1 GGGAUUGGGGUUAAGUUAGCUGCUCAUGUUCUUCUUGAUCUGGAUGUUGGGUCCAUCUGUGCCGAAGAUGCAGAGAUAUCUGGGAAAGAGACAGCUUGCAUGAUCAGUUGGCA ..............((((((((.((((((.((((((..((..((((((.....(((((.......)))))....))))))..))...)))).))...)))))).)))))))). ( -35.60) >consensus G______GGGUUAAGUUAGCUCCUCAUGUUUUUCUCGAUCUGGAUGUUGGGUCCAUCUGUGCCAAAGAUGCAGAGAUAUUGGGGAAAACGACAGCUUGCAUGAUCAGUUGGCA ..............(((((((..(((((((((((((((...((((.....))))((((.(((.......))).)))).)))))))))..........))))))..))))))). (-26.38 = -27.54 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:40 2006