Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,822,453 – 3,822,559 |
Length | 106 |
Max. P | 0.690690 |
Location | 3,822,453 – 3,822,559 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -24.77 |
Energy contribution | -24.78 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.92 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3822453 106 - 22407834 CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCCAACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCGAUGAAAAAAAUGU .(((((.((..(((((((....)))))))....(((.....((((((((((((((........))))))))..))))))....)))......)))))))....... ( -28.60) >DroSec_CAF1 11335 105 - 1 CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCCAACAAUGGCCAUGAUCGAUCUAUCGUAGCACACCCGAGGA-AAAAAUGU .((((..((..(((((((....)))))))....(((((...((((((((((((((........))))))))..)))))).))).))......)).))-))...... ( -27.50) >DroEre_CAF1 15694 106 - 1 CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCGCCACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCAAAGAACCAAAUGU ..(((......(((((((....)))))))....(((.....(((((((((((((((......)))))))))..))))))....))).........)))........ ( -26.50) >DroYak_CAF1 11681 106 - 1 CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCGAACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCAAAAGAGCAAAUCU ....((((((((((((((....)))))))......))).))))((((((((((((........))))))))..)))).....((((.(........).)))).... ( -25.40) >consensus CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCCAACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCAAAGAAAAAAAUGU ...........(((((((....)))))))....(((((...((((((((((((((........))))))))..)))))).))).)).................... (-24.77 = -24.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:37 2006