Locus 1436

Sequence ID 2L_DroMel_CAF1
Location 3,820,610 – 3,820,714
Length 104
Max. P 0.576321
window2339

overview

Window 9

Location 3,820,610 – 3,820,714
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.05
Mean single sequence MFE -30.65
Consensus MFE -22.86
Energy contribution -23.50
Covariance contribution 0.64
Combinations/Pair 1.13
Mean z-score -2.11
Structure conservation index 0.75
SVM decision value 0.09
SVM RNA-class probability 0.576321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3820610 104 + 22407834
UGCCGAUCUCGCCUUGAUUAUGUUGUCACACAA--------------GAAUCACAAGAUUAGACGAAAAUCACGGCGACGAUGAUAAGGCGAUAUAGAUCAAAGGAUCAUCGAGAUCG--
...(((((((((((((.((((((((((......--------------.((((....)))).((......))..)))))).))))))))))......((((....))))...)))))))-- ( -32.30)
>DroSec_CAF1 9512 104 + 1
UGCCGAUCUCGCCUUGAUUAUGUUGUCACAGAA--------------GAAUCACAAGAUUAGGCGAAAAUCACGGCGACGAUGAUAAGGCGAUGUAGAUCAAAGGAUCAUCGAGGUCG--
...(((((((((((((.((((((((((...(..--------------.((((....))))...)(.....)..)))))).))))))))))......((((....))))...)))))))-- ( -32.00)
>DroSim_CAF1 9882 104 + 1
UGCCGAUCUCGCCUUGAUUAUGUUGUCACACAA--------------GAAUCACAAGAUUAGAAGAAAAUCACGGCGACGAUGAUAAGGCGAUAUAGAUCAAUGGAUCAUCGAGGUCG--
...(((((((((((((.((((((((((......--------------.((((....)))).((......))..)))))).))))))))))......((((....))))...)))))))-- ( -31.90)
>DroEre_CAF1 13953 103 + 1
UGCCGAU-UCGCCUUGAUUAUGUUGUCACACAA--------------GAAUCACCAGAUUAGACGAAAAUCACGGCGACGAUGAUAAGGCGAUAUAGUUCAAAGGAUCACGGAGUUCG--
..(((..-...((((((((((((((((......--------------.((((....))))........((((((....)).))))..))))))))))))..))))....)))......-- ( -25.90)
>DroYak_CAF1 9725 104 + 1
UGCCGAUCUCGCCUUGAUUAUGUUGUCACACAA--------------GAAUCACAAGAUUAGACGAAAAUCACGGCGACGAUGAUAAGGCGAUAUAGAUCAAAGGAUCACAGAGUUCG--
...(((.(((((((((.((((((((((......--------------.((((....)))).((......))..)))))).))))))))))......((((....))))...))).)))-- ( -27.70)
>DroAna_CAF1 10203 119 + 1
UGCCGCC-CAGCCUCGAUUAUGUUGUCACAUCAUUGUUGUUUGGCUCAAAUCACAAGAUUAAAGGAAAAUCACGGCGGCGAUGAUGGGGCGAUAUAGAUCAAAGGACUAGAGCUAUAGGA
....(((-.(((((.((((((((((((.((((((((((((((((.((.((((....))))....))...))).))))))))))))).)))))))).))))..))).)).).))....... ( -34.10)
>consensus
UGCCGAUCUCGCCUUGAUUAUGUUGUCACACAA______________GAAUCACAAGAUUAGACGAAAAUCACGGCGACGAUGAUAAGGCGAUAUAGAUCAAAGGAUCAUCGAGAUCG__
...(((.((((((((.(((((((((((.....................((((....))))....(.....)..)))))).))))))))))......((((....))))...))).))).. (-22.86 = -23.50 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:36 2006