Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,819,401 – 3,819,497 |
Length | 96 |
Max. P | 0.999116 |
Location | 3,819,401 – 3,819,497 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -23.04 |
Energy contribution | -22.56 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.17 |
Mean z-score | -2.49 |
Structure conservation index | 0.87 |
SVM decision value | 3.38 |
SVM RNA-class probability | 0.999116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3819401 96 - 22407834 ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCUCCACACUGCGGAACAACUUCCC---CAAGUUAUGGCCACAAAAA-A ..........(((((((.(((.(..((((..((((........))))))))..).)))(((..((((....)))).---..)))..))))))).....-. ( -27.70) >DroSec_CAF1 8312 94 - 1 ACUUCCUUCCGUGGCAACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCUCCA-ACUGCGGAACAACUUCCC---CAAGUUAUGGCCACAA-AA-A ..........(((((.........(((.((((..........)))).)))......(-(((..((((....)))).---..))))...)))))..-..-. ( -22.30) >DroSim_CAF1 8705 94 - 1 ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCGCAUCUCCA-ACUGCGGAACAACUUGCC---CAAGUUAUGGCCACAA-AA-A ..........((((((((((((((((......)))...))))))..(((((......-..)))))...(((((...---.))))).)))))))..-..-. ( -26.20) >DroEre_CAF1 12713 96 - 1 ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACUUCUCCA-ACUGCCGAACAACUUCCC--CCGGGUUAUGGCCACAA-AAAC ..........(((((((.(.(((((((.((((..........)))).))))).))).-....(((...........--.)))....)))))))..-.... ( -25.40) >DroYak_CAF1 8481 98 - 1 ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCGCCA-ACUGCGGCACAACUUGCCCCCAGAGUUAUGGCCACAA-AACA ..........(((((((.((((..(((.((((..........)))).))).))))..-.(((.((((.....))))..))).....)))))))..-.... ( -30.30) >consensus ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCUCCA_ACUGCGGAACAACUUCCC___CAAGUUAUGGCCACAA_AA_A ..........(((((((.((....(((.((((..........)))).)))...(((.......)))))(((((.......))))).)))))))....... (-23.04 = -22.56 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:35 2006