Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,816,335 – 3,816,435 |
Length | 100 |
Max. P | 0.744284 |
Location | 3,816,335 – 3,816,435 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.05 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -18.59 |
Energy contribution | -19.63 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.54 |
Structure conservation index | 0.68 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3816335 100 - 22407834 AAAAUA-UC-AA-AACCCUGCUGUUGUUGUUUUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAUAUGGAAAAACGG- ......-..-..-...((((((((((((((...(((.(((.(((((....))))).))).))).....))))))))))))-(((.........)))......))- ( -28.10) >DroSec_CAF1 5288 101 - 1 AAACUUGCCAAA-AACCUUGCUGUAG--GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUUUCCAGCAGCAGCAUCCACCAACAAUAAGGAAAAGCGG- .......((...-.....((((((.(--(.((((((((...(((((....))))))))))))).....)).))))))((.(((...........)))...))))- ( -24.70) >DroSim_CAF1 5271 97 - 1 AAAAUA-CC-AA-AACCCUGCUGUU---GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAUAUGGAAAAGCGG- ......-((-(.-.....(((((((---(.((((((.(.(((((..((((((....).)))))....)))))).))))))-.))))))))...)))........- ( -30.30) >DroEre_CAF1 9617 97 - 1 AAAAUA-CC-AAAAACCCAGCUAUU---GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAUAUGGAAAAUCG-- ......-..-......(((..((((---(((((((.....(((.((((((((...(((......))).)))))))).)))-.)))))))))))))).......-- ( -26.50) >DroYak_CAF1 5266 98 - 1 AAAAUA-CC-AA-AACGCAGCUCUU---GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA-CCAACAGCAAAAUGGAAAAGCGGU ......-..-..-..(((...(((.---.(((((((.(..(((.((((((((...(((......))).)))))))).)))-.).)))))))...)))...))).. ( -26.50) >consensus AAAAUA_CC_AA_AACCCUGCUGUU___GUUGUUGUCGUCUGUAGUUGUUGCUAUUGACAAUAUUUAUGCAGCAGCAGCA_CCAACAGCAAUAUGGAAAAGCGG_ ...................(((......((((((((....(((.((((((((................)))))))).)))....)))))))).......)))... (-18.59 = -19.63 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:34 2006