Locus 1433

Sequence ID 2L_DroMel_CAF1
Location 3,815,462 – 3,815,558
Length 96
Max. P 0.647480
window2336

overview

Window 6

Location 3,815,462 – 3,815,558
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.35
Mean single sequence MFE -17.93
Consensus MFE -11.48
Energy contribution -11.03
Covariance contribution -0.44
Combinations/Pair 1.23
Mean z-score -1.49
Structure conservation index 0.64
SVM decision value 0.24
SVM RNA-class probability 0.647480
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3815462 96 + 22407834
------UUACGUGGUAUACAAUACAUAAUGCCAUUAUUAUCAUAAGCGUGCUUUUUUGUGGAUACAACAAAAGCAGCG-GCAAGUAAGUUUCUGGAC--AAAAAA
------(((((((........)))....((((.((((....))))((.(((((((((((....)))).))))))))))-))).))))(((....)))--...... ( -18.90)
>DroVir_CAF1 10151 90 + 1
UGAGGCUUUCGCCCCAGACAAUACAUAAUGACAUUAUUAUUAUAAGCGUGCUUUUUUGUGGAUACAACAAGAGCAGCAUGUAAA---------------AAAUAA
((.(((....))).))........(((((((.....)))))))..((((((((((((((.......))))))).)))))))...---------------...... ( -20.40)
>DroEre_CAF1 8734 95 + 1
------UUACGUGGUAUACAAUACAUAAUGCCAUUAUUAUCAUAAGCGUGCUUUUUUGUGGAUACAACAAAAGCAGCG-GCA-GUAAGUUUCUACAC--AAAAAA
------....(((((((...))))....((((.((((....))))((.(((((((((((....)))).))))))))))-)))-...........)))--...... ( -19.60)
>DroYak_CAF1 4407 96 + 1
------UUACGUGGUAUACAAUACAUAAUGCCAUUAUUAUCAUAAGCGUGCUUUUUUGUGGAUACAACAAAAGCAGCG-GCAAGUAAGUUUCAACUC--AAAAAA
------(((((((........)))....((((.((((....))))((.(((((((((((....)))).))))))))))-))).))))..........--...... ( -18.50)
>DroMoj_CAF1 5493 95 + 1
------UUCCACACUAGACAAUACAUAAUGACAUUAUUAUUAUAAGCGUGCUUUUUUGUGGAUACAACAAGAGCAGCAUACAAGAAAAG----AAACAAAAAAUA
------..................(((((((.....)))))))..((.(((((((((((....)))).)))))))))............----............ ( -12.60)
>DroAna_CAF1 5119 92 + 1
------UUACUUGCCACACAAUACAUAAUGCCAUUAUUAUCAUAAGCGUGCUUUUUUGUGGAUACAACAAAAGCAGCA-GCAAGU---UUUCUGUAA--AAAAG-
------..((((((..........((((((....)))))).....((.(((((((((((....)))).))))))))).-))))))---.........--.....- ( -17.60)
>consensus
______UUACGUGCUAUACAAUACAUAAUGCCAUUAUUAUCAUAAGCGUGCUUUUUUGUGGAUACAACAAAAGCAGCA_GCAAGUAAGUUUCUACAC__AAAAAA
.............................................((.(((((((((((.......))))))).)))).))........................ (-11.48 = -11.03 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:33 2006