Locus 1432

Sequence ID 2L_DroMel_CAF1
Location 3,814,915 – 3,815,014
Length 99
Max. P 0.931871
window2335

overview

Window 5

Location 3,814,915 – 3,815,014
Length 99
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 84.01
Mean single sequence MFE -28.00
Consensus MFE -19.05
Energy contribution -19.23
Covariance contribution 0.19
Combinations/Pair 1.14
Mean z-score -2.41
Structure conservation index 0.68
SVM decision value 1.22
SVM RNA-class probability 0.931871
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3814915 99 - 22407834
AAAGAGGCAGAGUCAGGUAGGAUUGUAUCUGCAUCUAACUACAUAUAUGGUAUGGGUUAUAGGA----UGGAAUAGAUCAAGGGCUCUGGUGGGCAGCUGGUG
...(.(.(((((((.(((...(((.(((((.....(((((.(((((...))))))))))..)))----)).)))..)))...))))))).)...)........ ( -23.10)
>DroSim_CAF1 3913 84 - 1
AAUGAGCCAGAGUCAGGUAGGAUUGUAUCUGCAUCUAUC----UAUAUGGUAUAGGUCAUAGGA----UGGAAUAGAUCAAGGGCUCUGGU-----------G
.....(((((((((..(((((......))))).((((((----(.(((((......))))))))----))))..........)))))))))-----------. ( -28.80)
>DroEre_CAF1 8182 95 - 1
AAAGAGCCAGAGUCAGGUAGCAUUGUAUCUGCAUCUAUC----UAUAUGGUAUAGGUUAUAGGA----UGGAAUAGAUCAAGGGCUCUGGUGGGCAGCUGGUG
.....(((((.(((.((.(((.(((.(((((..((((((----(.(((((......))))))))----)))).))))))))..)))))....)))..))))). ( -27.00)
>DroYak_CAF1 3862 99 - 1
AAAGAGCCAGAGUCAGGUAGCAUUGUAUCUACAUCUAUC----UAUAAGGUAUGGGCUAUUGGAUAGAUGGAUUAGAUCCAGGGCUCUGGUGGGCAGCUGGUG
.....(((((.(((.((.(((.(((.(((((.(((((((----(((..((((.....))))..))))))))))))))).))).)))))....)))..))))). ( -33.10)
>consensus
AAAGAGCCAGAGUCAGGUAGCAUUGUAUCUGCAUCUAUC____UAUAUGGUAUAGGUUAUAGGA____UGGAAUAGAUCAAGGGCUCUGGUGGGCAGCUGGUG
.....(((((((((..((((........)))).((((........(((((......))))).......))))..........)))))))))............ (-19.05 = -19.23 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:32 2006