Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 431,925 – 432,035 |
Length | 110 |
Max. P | 0.940200 |
Location | 431,925 – 432,035 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.98 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -17.58 |
Energy contribution | -17.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.80 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.940200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 431925 110 + 22407834 AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCAAUAGAUCGGUUUUAAGAGUGCACGAAGAGUGAGCUUUAGUUAAACAAAACUACCAAACCAAAAUUAAAAAGCC .....(((((.((..((((((......((((..(((....))).))))....))))))...)).)))))(((((((((......)))))................)))). ( -19.79) >DroSec_CAF1 9476 109 + 1 AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-CAGAGUGCACGAAUAGUGAGCUUAAGUUAAACAAAACUAGCAAACCAAAAUUAAAAAGCC .....((((((((..((((((((((((......)))))).....(....-).))))))...))))))))(((..((((......)))))))................... ( -24.70) >DroSim_CAF1 8462 109 + 1 AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-CAGAGUGCACGAAUAGUGAGCUUAAGUUAAACAAAACUAGCAAACCAAAAUUAAAAAGCC .....((((((((..((((((((((((......)))))).....(....-).))))))...))))))))(((..((((......)))))))................... ( -24.70) >DroEre_CAF1 9311 101 + 1 A-AUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-AAGAGUGCACGAAGAGUGAGCAAAAGUUAAACAAAACUAC-------AAAUUGAAAAGCC .-..((((((.((..((((((((((((......)))))).((.....))-..))))))...)).))))))....((((......))))..-------............. ( -20.40) >DroYak_CAF1 8882 102 + 1 AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC-AAGAGUGCACGAAGAGUGAGCAAAAGUUAAACAAAACUAC-------AAAUUGAAAAGCC ....((((((.((..((((((((((((......)))))).((.....))-..))))))...)).))))))....((((......))))..-------............. ( -20.40) >consensus AAAUUUUACUGUUAGGCACUUAUCGAUAGCCAAAUCGAUAGAUCGGUUC_AAGAGUGCACGAAGAGUGAGCUUAAGUUAAACAAAACUACCAAACCAAAAUUAAAAAGCC ....((((((.((..((((((((((((......)))))))).((........))))))...)).))))))....((((......))))...................... (-17.58 = -17.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:17 2006