Locus 1424

Sequence ID 2L_DroMel_CAF1
Location 3,807,111 – 3,807,224
Length 113
Max. P 0.889600
window2315

overview

Window 5

Location 3,807,111 – 3,807,224
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -36.32
Consensus MFE -34.70
Energy contribution -34.46
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.96
SVM decision value 0.96
SVM RNA-class probability 0.889600
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3807111 113 - 22407834
ACUGUGCUGGUCGUACAUGAGAUGGGCGCAGGAUGACGACGUCUGCUGGUGACACAUCAUUGCAGAAGCUAUUGGUUUUUGGCCAGCAACACCUGGCAGGAUAACAAACCCAA-------
.(((((((.(((........))).)))))))((((.(....(((((.(((((....)))))))))).).))))(((((...(((((......))))).(.....))))))...------- ( -35.80)
>DroSec_CAF1 16419 113 - 1
ACUGUGCUGGUCGUACAUGAGAUGGGCGCAGGAUGACGACGUCUGCUGGUGACACAUCAUUGCAGAAGCUAUUGGUUUUUGGCCAGCAACACCUGACAGGAUAACAAAGCCAA-------
.(((((((.(((........))).)))))))((((....))))(((((((((....))....(((((((.....))))))))))))))...((.....)).............------- ( -35.30)
>DroSim_CAF1 16410 113 - 1
ACUGUGCUGGUCGUACAUGAGAUGGGCGCAGGAUGACGACGUCUGCUGGUGACACAUCAUUGCAGAAGCUAUUGGUUUUUGGCCAGCAACACCUGACAGGAUAACAAAGCCCA-------
.(((((((.(((........))).)))))))((((....))))(((((((((....))....(((((((.....))))))))))))))...((.....)).............------- ( -35.30)
>DroEre_CAF1 17864 120 - 1
ACUGUGCUGGUCGUACAUGAGAUGGGCGCAGGAUGACGACGUCUGCUGGUGACACAUCAUUGCAGAAGCUAUUGGUUUUUGGCCAGCAACACCUGGCAGGAAAACAAAUACAGUUAAUAA
.(((((((.(((........))).)))))))..((((....(((((.(((((....)))))))))).(.((((.((((((.(((((......)))))..)))))).))))).)))).... ( -40.90)
>DroYak_CAF1 18229 114 - 1
ACUGUGCUGGUCGUACAUGAGAUGGGCGCAGGAUGACGACGUCUGCUGGUGACACAUCAUUGCAGAAGCUAUUGGUUUUUGGCCAGCAACACCUGACAGAUUA-CA---ACAUUUAGU--
.(((((((.(((........))).)))))))((((....))))(((((((((....))....(((((((.....))))))))))))))...............-..---.........-- ( -34.30)
>consensus
ACUGUGCUGGUCGUACAUGAGAUGGGCGCAGGAUGACGACGUCUGCUGGUGACACAUCAUUGCAGAAGCUAUUGGUUUUUGGCCAGCAACACCUGACAGGAUAACAAAGCCAA_______
.(((((((.(((........))).))).((((..(((...)))(((((((((....))....(((((((.....))))))))))))))...))))))))..................... (-34.70 = -34.46 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:13 2006