Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,807,009 – 3,807,108 |
Length | 99 |
Max. P | 0.913363 |
Location | 3,807,009 – 3,807,108 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -24.96 |
Consensus MFE | -16.73 |
Energy contribution | -16.48 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.07 |
Mean z-score | -2.07 |
Structure conservation index | 0.67 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3807009 99 + 22407834 CCUCGAUGUGGAAAACCAACGUCACUUAGACGUGGAUAUGGAAACUAGUAAGUGAUC--------------------AAGAUACUUUUAAAAACUACAUAC-UACAUCGGAUAUCCUAAC ..(((((((((....(((.((((.....))))))).((((.........(((((...--------------------....)))))..........)))))-)))))))).......... ( -22.81) >DroSec_CAF1 16298 118 + 1 CCUCGAUGUGGAAAACCAACGUCACUUAGACGUGGAUAUGGAAACUAGUAAGUGAUUA-ACAGCACAUCCAGAUCUUAAGAUACUUUUAAAGUCUACAUAC-UAUAUCGGAUAUCCUAAC ..(((((((((.......(((((.....)))))((((..(....)......(((....-....)))))))(((..((((((...))))))..))).....)-)))))))).......... ( -26.40) >DroSim_CAF1 16288 119 + 1 CCUCGAUGUGGAAAACCAACGUCACUUAGACGUGGAUAUGGAAACUAGUAAGAUAUCAAACAGCACAUACAGAUCUUAAGAUACUUUGAAAUAUUACACAC-UAUAUCGGAUAUCCUAAC ..(((((((((....(((.((((.....)))))))....(....)..((((.((.(((((............(((....)))..))))).)).))))...)-)))))))).......... ( -22.94) >DroEre_CAF1 17705 119 + 1 CCUCGAUGUGGAAAACCAACGUCACUUAGACGUGGAUAUGGAAACUAGUAAGUGAUGA-ACGACAUACACAAUCCUAAAGAUACAUUUGAGAACUAUGUAUGUACAUCGCAUACUUUUAC .......((((((..(((.((((.....)))))))....(....)..(((.((((((.-...(((((((...((.((((......)))).))....))))))).)))))).))))))))) ( -27.70) >consensus CCUCGAUGUGGAAAACCAACGUCACUUAGACGUGGAUAUGGAAACUAGUAAGUGAUCA_ACAGCACAUACAGAUCUUAAGAUACUUUUAAAAACUACAUAC_UACAUCGGAUAUCCUAAC ...(((((((.....(((.((((.....)))))))....(....).........................................................)))))))........... (-16.73 = -16.48 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:12 2006