Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,805,698 – 3,805,788 |
Length | 90 |
Max. P | 0.728299 |
Location | 3,805,698 – 3,805,788 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -28.10 |
Energy contribution | -28.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 1.00 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3805698 90 - 22407834 UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA ..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10) >DroSec_CAF1 14952 90 - 1 UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA ..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10) >DroSim_CAF1 14985 90 - 1 UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA ..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10) >DroEre_CAF1 16312 90 - 1 UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA ..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10) >DroYak_CAF1 16711 90 - 1 UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA ..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... ( -28.10) >consensus UGCUGACUUUGCUGGUUACUACGGUGUUACUGUGUGUAUCGGGUAUAUAUCGGGUAUAUUCGCUACAGCCCACCGCCCGUCACCGGCUAA ..........((((((.((..(((((...(((((.....(((((((((.....))))))))).)))))..)))))...)).))))))... (-28.10 = -28.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:10 2006