Locus 1420

Sequence ID 2L_DroMel_CAF1
Location 3,803,588 – 3,803,688
Length 100
Max. P 0.982244
window2311

overview

Window 1

Location 3,803,588 – 3,803,688
Length 100
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 79.14
Mean single sequence MFE -13.90
Consensus MFE -9.06
Energy contribution -9.82
Covariance contribution 0.75
Combinations/Pair 1.22
Mean z-score -3.22
Structure conservation index 0.65
SVM decision value 1.91
SVM RNA-class probability 0.982244
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3803588 100 + 22407834
CUGGUUUUCCUGCAAUUCCACAACCGAAAA-AAUCUAAUAAAUUUAAUUUCCUAAUAAAAUACACAAUUUUGUGAUCAAACAAAAGGAAAACCAACAUCUA
.((((((((((....(((.......)))..-...............................((((....))))..........))))))))))....... ( -16.00)
>DroSec_CAF1 12851 100 + 1
CUGGUUUUCCUGCAAUUCCACAACCGAAAA-AAUCAAAUAAAUUUUAUUCCCUAAUAAAAUACACAAUUUUGUUAUCAAACAAAAGGAAAACCAACAUCUA
.((((((((((...................-..........((((((((....)))))))).......((((((....))))))))))))))))....... ( -18.80)
>DroSim_CAF1 12859 100 + 1
CUGGUUUUCCUGCAAUUCCACAACCGAAAA-AAUCAAAUAAAUUUAAUUCCCUAAUAAAAUACACAAUUUUGUUAUCAAACAAAAGGAAAACCAACAUCUA
.((((((((((..............((...-..)).................(((((((((.....))))))))).........))))))))))....... ( -17.00)
>DroEre_CAF1 14090 101 + 1
CUGGUUUUCCUGCAAUUCCACAAACGAAAAAAACCAAAUAAAUUCAAAUCCCUAAUAAAAUAAACAAUUUUGUGAUCAAACAAAAGGAAAAUCGACAUCUA
.((((((((((....(((.......)))........................................(((((......)))))))))))))))....... ( -12.60)
>DroYak_CAF1 14470 100 + 1
CUGGUUUUCCUGCAAUUCCACAAUCGAAAA-AAUGAAAUAAAUUCAAAUCCCUAAUAAAAUAAACAAUUUUGUGAUCAAACAAAAGAAAAAUUAACAUCUA
....(((((.....................-..((((.....)))).....................((((((......)))))))))))........... (  -6.30)
>DroAna_CAF1 12436 78 + 1
CUGGUUUUCCU-CAUUUCC------CAAAA-AACCCAGAAAAUCCAAA-------------GAACACUCUUGCGACU--ACAACUGGCCGAGCAGGAGCUG
((((((((...-.......------...))-)).))))..........-------------...(((((((((....--.(....).....))))))).)) ( -12.72)
>consensus
CUGGUUUUCCUGCAAUUCCACAACCGAAAA_AAUCAAAUAAAUUCAAAUCCCUAAUAAAAUAAACAAUUUUGUGAUCAAACAAAAGGAAAACCAACAUCUA
.(((((((((.....(((.......))).......................................((((((......)))))))))))))))....... ( -9.06 =  -9.82 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:09 2006