Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 431,147 – 431,266 |
Length | 119 |
Max. P | 0.774630 |
Location | 431,147 – 431,266 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 97.82 |
Mean single sequence MFE | -34.31 |
Consensus MFE | -33.39 |
Energy contribution | -33.39 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.25 |
Structure conservation index | 0.97 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 431147 119 - 22407834 GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCUCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU ..((((((((((((((..((((((.((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... ( -34.61) >DroSec_CAF1 8699 119 - 1 GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACACCGAAGAUCGAGUUGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU ..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))......(..(((((((.....)))))))..)...... ( -34.61) >DroSim_CAF1 7685 119 - 1 GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU ..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... ( -35.91) >DroEre_CAF1 8506 119 - 1 GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGUAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUCAACGAAGCCGCGUUU ..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..((((((.......))))))..).))... ( -32.31) >DroYak_CAF1 8094 119 - 1 GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGUAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACCUAACGAAGCCGCGUUU ..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... ( -34.11) >consensus GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU ..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))...((.(..(((((((.....)))))))..).))... (-33.39 = -33.39 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:16 2006