Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,803,142 – 3,803,259 |
Length | 117 |
Max. P | 0.740901 |
Location | 3,803,142 – 3,803,259 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 93.21 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -24.86 |
Energy contribution | -25.10 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.31 |
Structure conservation index | 0.88 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3803142 117 + 22407834 AAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAA-AAAAGAAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAGUUCUAUAGAAAUUGAAAAACCUAAA .........((((((..((((.....((..(((((((((((..-...((....))....))))......))).)))).))...))))..(((.(((....))).)))....)))))). ( -25.80) >DroSec_CAF1 12397 116 + 1 GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAA--AAAGAAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAUUUCUAUAGAAAUGGAAAAAGCUAAA ...((((((...(((((((((((((.((.......))((((..--..((....))....)))))))))))).))))).....))))))....(((((((....)))))))........ ( -27.30) >DroSim_CAF1 12403 118 + 1 GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGGAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAGUUCUAUAGAAAUGGAAAAGGCUAAA ...((((((...(((((((((((((.((((.((....))........((....))....)))))))))))).))))).....)))))).....((((((....))))))......... ( -30.00) >DroEre_CAF1 13558 118 + 1 GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGAAAACUCUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGCUAAAUUCUAUAAAAAUGGAAAAAGCUACA ....(((((...(((((((((((((.((((.((....)).......((((....)))).)))))))))))).))))).....)))))(((...((((((....))))))..))).... ( -30.90) >DroYak_CAF1 13945 118 + 1 AAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGAAAACUCUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCACUAGAUUCUAUAGAAAUGGUAAAAGCUACA ....(((((...(((((((((((((.((((.((....)).......((((....)))).)))))))))))).))))).....)))))((((..(((....))).)))).......... ( -27.90) >consensus GAAUGUUCAUUGGGUAAGCUCUUUAUGCAAGGCACGCGCAAAAAAAAAGAAAACUGUUGUUGCUGGAGAGUGUUGCCAGCUCUGAGCGACAAAUUCUAUAGAAAUGGAAAAAGCUAAA ...((((((...(((((((((((((.((((.((....))........((....))....)))))))))))).))))).....)))))).....((((((....))))))......... (-24.86 = -25.10 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:08 2006