Locus 1418

Sequence ID 2L_DroMel_CAF1
Location 3,795,346 – 3,795,458
Length 112
Max. P 0.637591
window2309

overview

Window 9

Location 3,795,346 – 3,795,458
Length 112
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 75.75
Mean single sequence MFE -35.74
Consensus MFE -20.11
Energy contribution -20.51
Covariance contribution 0.39
Combinations/Pair 1.44
Mean z-score -1.58
Structure conservation index 0.56
SVM decision value 0.21
SVM RNA-class probability 0.637591
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3795346 112 - 22407834
ACAUACAGUGCCCCAUCGUCCCUUUAGGUAUACCUGAAGUCUUCCCUCAUUGGCACCCGCUCCUCCGACCAAGCGAACUGGAACUCGAGGUA---CACCAUCCGCGGGUAUUACU
..((((.(((((.........(((((((....)))))))............)))))((((.....((((((.......)))...))).((..---..))....)))))))).... ( -27.40)
>DroVir_CAF1 5774 112 - 1
GCAGACAGUGCCCCAGCGACCCUUCAAGUACAGCUGCAGGCGACCCUCGUGUGCGCCCGUACCGCCCACUAGACGUACCGGCACCCGGGGCA---CAGCGUCCGCGGGCAGCACC
((.....((((((((((.((.......))...)))(((.(((.....))).)))(((.((((..(......)..)))).)))....))))))---)...(((....))).))... ( -42.20)
>DroGri_CAF1 5440 112 - 1
ACAGACGGUGCCCCAGCGACCCUUCAGGUACAGCUGUAGUCGACCCUCAUGAGCACCCGCUCCACCCACCAGACGCACUGGCACCCGCGGCU---UUCCAUCUGCGGGCAUCAUC
.....((((((..((((.(((.....)))...))))..(((.........((((....)))).........)))))))))...(((((((..---......)))))))....... ( -37.67)
>DroEre_CAF1 4556 112 - 1
GCACACAGUGCCCCAUCGUCCCUUCAGGUAAACCUGAAGUCUUCCCUCAUUGGCGCCCGUUCCUCCUACUAAUCGAACUGGAACUCGCGGCA---CUCCAUCCGACGGUAUUACC
((((...))))...((((((.(((((((....)))))))...........((.(((..(((((................)))))..))).))---........))))))...... ( -32.29)
>DroYak_CAF1 4863 112 - 1
ACACACGGUGCCCCAUCGUCCCUUUAGGUAAACCUGAAGUCUUCCCUCAUUGGCACCCGUUCCGCCGACCAAUCGAACUGGAACUCGCGGUA---CACCAUCCGAGGGUACUACU
......((((((.........(((((((....)))))))............)))))).((((((.(((....)))...))))))..(..(((---(.((......))))))..). ( -32.90)
>DroAna_CAF1 4739 115 - 1
GCAGACGGUGCCCCACCGUCCCUUUACGUAGACCUGGAGCCUUCCUUCGUUCGCCCCGGUGCCGCCCACCAAGCGCACUGGCACGCUAGGAAUCCCUCCAUCCGAGGGCACCAUC
......((((((((...(((..........))).(((((..(((((.(((..(((..(((((.((.......)))))))))))))..)))))...)))))...).)))))))... ( -42.00)
>consensus
ACAGACAGUGCCCCAUCGUCCCUUCAGGUAAACCUGAAGUCUUCCCUCAUUGGCACCCGUUCCGCCCACCAAACGAACUGGAACUCGCGGCA___CACCAUCCGAGGGCAUCACC
......(((((((..(((...(((((((....)))))))...............(((((.(((................)))...)).)))...........))))))))))... (-20.11 = -20.51 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:07 2006