Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,786,696 – 3,786,788 |
Length | 92 |
Max. P | 0.511892 |
Location | 3,786,696 – 3,786,788 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -12.71 |
Consensus MFE | -7.35 |
Energy contribution | -8.13 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.06 |
Mean z-score | -1.85 |
Structure conservation index | 0.58 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3786696 92 - 22407834 AAGCUUUGAGACUCGAGCCCAAAAGUAUAGCAAAGUUAUAUCCUCUUUUAACUUUGUUUCAAGAAUCUCCCAGUUCCUUUCUAGUUUCCAUU .......((((((.(((.......(...((((((((((..........)))))))))).)..((((......))))..))).)))))).... ( -15.40) >DroSec_CAF1 255631 82 - 1 AAGCUUUGAGAUUCAAGCCCAAAAG----------UUCUAUCCUCUUUUUACUUUAUUGUUAGAAUCUUCCAGUUUCUUUCUAGUUCCCAAU (((((..(((((((.(((...((((----------(..............)))))...))).)))))))..)))))................ ( -12.74) >DroSim_CAF1 256741 91 - 1 AAGCUUUGAGAUUCAAUCUUGAAAGUAUGGCAAA-UUAUAUCCUCUUUUCACUUCACUUUAAGAAUCUCCCAGUUCCUUUCUAAUUCCCAUU .((((..(((((((.......(((((..((..((-............))..))..)))))..)))))))..))))................. ( -10.00) >consensus AAGCUUUGAGAUUCAAGCCCAAAAGUAU_GCAAA_UUAUAUCCUCUUUUAACUUUAUUUUAAGAAUCUCCCAGUUCCUUUCUAGUUCCCAUU .((((..(((((((.......(((((........................))))).......)))))))..))))................. ( -7.35 = -8.13 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:05 2006