Locus 1415

Sequence ID 2L_DroMel_CAF1
Location 3,785,551 – 3,785,671
Length 120
Max. P 0.812115
window2306

overview

Window 6

Location 3,785,551 – 3,785,671
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.93
Mean single sequence MFE -24.71
Consensus MFE -15.28
Energy contribution -15.92
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.62
SVM decision value 0.65
SVM RNA-class probability 0.812115
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3785551 120 - 22407834
GAAAAAAAAAGUGGUACUAAAGACGUGAUCUAAAACAGCGCCCCCUAGUCAGUCGUAUUGCGAAGUUUUGGGCGCAUUUAUUAUUCGAGUUCGAAAAAAUUCAAAUGUCUUUAAAAUAAA
.................(((((((((...........((((((.........(((.....)))......))))))........((((....)))).........)))))))))....... ( -26.76)
>DroSec_CAF1 255215 90 - 1
-----------------------------CUAAAACAGCGCCCCCUAGUCAGUCGAAGUGCGAAGUCUUGGGCGCAUUUAUUAUUCGAGUUCGAAA-AAUUCAAAUGUCUUUGAAAUAAA
-----------------------------........((((((...((....(((.....)))...)).))))))........((((....)))).-..((((((....))))))..... ( -21.30)
>DroSim_CAF1 256324 91 - 1
-----------------------------CUAAAACAGCGCCCUCUAGUCAGUCGUAGUGCGAAGUCUUGGGCGCAUUUAUUAUUCGAGUUCGAAAAAAUUCAAAUGUCUUUGAAAUAAA
-----------------------------........((((((...((....(((.....)))...)).))))))........((((....))))....((((((....))))))..... ( -22.90)
>DroEre_CAF1 262284 91 - 1
-----------------------------CUAAAAGAGCGCCACCUAGUCGGUCGUAAGGCGCAAACUUGGGCGCGGAUUCUAUUCGAGUUCGAAAGAAUUCAAAUUCGUUCGUAGUAAC
-----------------------------(((...(((((((....(((.((((....))).)..)))..)))))(((((((.((((....)))))))))))........)).))).... ( -27.50)
>DroYak_CAF1 266459 91 - 1
-----------------------------CUAAGACAGCGCCACCUAGUCAGUCGUAGUGCGCAGUCUUGGGCGCGUUUAUUAUUCGAGUUCGAAGAAAUUCAAAUUCUUUUGUAGUAAA
-----------------------------(((((((.((((.((...(.....)...)))))).))))))).....((((((((..(((((.(((....))).)))))....)))))))) ( -25.10)
>consensus
_____________________________CUAAAACAGCGCCCCCUAGUCAGUCGUAGUGCGAAGUCUUGGGCGCAUUUAUUAUUCGAGUUCGAAAAAAUUCAAAUGUCUUUGAAAUAAA
.....................................((((((...((....(((.....)))...)).))))))........((((....))))......................... (-15.28 = -15.92 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:04 2006