| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,781,877 – 3,781,992 |
| Length | 115 |
| Max. P | 0.723030 |
| Location | 3,781,877 – 3,781,992 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.90 |
| Mean single sequence MFE | -34.30 |
| Consensus MFE | -23.86 |
| Energy contribution | -24.37 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.723030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3781877 115 + 22407834 -UUGUUUCUCCACUUG--UAUUCGC-CCAGGUAUAUUCACUCCAAGGAGAAACCCUUCAAAUGCACGGAAUGCGGCAAGGGAUUCUGCCAAUCGAGAACCUUGGCUGUCCACAAGAUCC -...........((((--(...(((-(.((((.......(((...((((((.(((((....((((.....))))..))))).)))).))....))).)))).))).)...))))).... ( -28.40) >DroVir_CAF1 320031 111 + 1 UCCCCCUCUUUCC-UUCU------G-UCAGGUAUAUACACUCGAAGGAGAAGCCAUUCAAGUGCACGGAAUGCGGCAAGGGCUUCUGUCAGUCACGCACCCUCGCCGUGCACAAGAUCC ........(((((-(((.------(-....((....))...)))))))))..........((((((((..((((.....(((....))).....))))......))))))))....... ( -31.90) >DroPse_CAF1 271857 117 + 1 CUCGUCUCUUCCCCUG--UCUUUCCUGAAGGUACAUCCACUCGAAGGAGAAGCCAUUCAAGUGCACCGAAUGCGGCAAGGGCUUCUGCCAGUCGCGCACUCUGGCGGUGCACAAGAUCC ...............(--((((...(((((((...(((.......)))...))).)))).(((((((....(((((...(((....))).)))))((......)))))))))))))).. ( -39.80) >DroGri_CAF1 291361 112 + 1 CUCGUUUCCCCCCUUGAU------C-ACAGGUACAUCCACUCCAAGGAGAAACCGUUCAAGUGCACGGAAUGUGGCAAGGGCUUCUGCCAGUCACGGACUCUGGCCGUGCACAAAAUCC ...(((((...(((((..------.-...((.....))....))))).))))).......((((((((..((((((...(((....))).))))))........))))))))....... ( -35.70) >DroAna_CAF1 274924 113 + 1 -CUUUUUUU--AAAUA--UUUUCUU-ACAGGUAUAUCCACUCCAAGGAGAAGCCUUUCAAAUGCACGGAAUGCGGCAAAGGCUUCUGCCAGUCCAGGACUCUGGCCGUGCACAAGAUCC -........--.....--...((((-..((((...(((.......)))...))))......(((((((.....((((........))))...((((....))))))))))).))))... ( -30.20) >DroPer_CAF1 270575 117 + 1 CUCGUCUCUUCCCCUG--UCUUUCCUGAAGGUACAUCCACUCGAAGGAGAAGCCAUUCAAGUGCACCGAAUGCGGCAAGGGCUUCUGCCAGUCGCGCACUCUGGCGGUGCACAAGAUCC ...............(--((((...(((((((...(((.......)))...))).)))).(((((((....(((((...(((....))).)))))((......)))))))))))))).. ( -39.80) >consensus CUCGUCUCUUCCCCUG__U_UU__C_ACAGGUACAUCCACUCCAAGGAGAAGCCAUUCAAGUGCACGGAAUGCGGCAAGGGCUUCUGCCAGUCGCGCACUCUGGCCGUGCACAAGAUCC .............................(((...(((.......)))...)))......((((((((..((((((...(((....))).))))))........))))))))....... (-23.86 = -24.37 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:03 2006