Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,781,462 – 3,781,555 |
Length | 93 |
Max. P | 0.515364 |
Location | 3,781,462 – 3,781,555 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 81.92 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -12.78 |
Energy contribution | -12.78 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.42 |
Structure conservation index | 0.51 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3781462 93 + 22407834 GC---------UGCUGCUAUCCAACAGCAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAGCCAGAUCGCAUACACGAAAGUU ((---------(((((((.......)))).((((..((((((.....))))))..))))..............---...)))))............((....)). ( -25.50) >DroSec_CAF1 251097 93 + 1 GC---------UGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAGCCAGAUGGCAUGCACGGAAGUU ((---------....))..(((........((((..((((((.....))))))..))))..............---..(((((((....))).)))).))).... ( -26.80) >DroSim_CAF1 250480 93 + 1 GC---------UGCUGGUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAGCCAGAUCGCAUGCACGAAAGUU ((---------((((((...))).......((((..((((((.....))))))..))))..............---...)))))............((....)). ( -23.20) >DroEre_CAF1 258184 93 + 1 GC---------UGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAUGCCCGUAGCAAACACGAACGUU ((---------(((.((.............((((..((((((.....))))))..))))...(((........---.)))...))..)))))............. ( -19.70) >DroYak_CAF1 262202 102 + 1 GCUGCGGCUGCUGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU---AAUGCAAGCAGUUCGCAAGCACGAAAGUU ((((((((((((((((........))....((((..((((((.....))))))..))))..............---...)).))))).)))).)))((....)). ( -32.20) >DroPer_CAF1 270376 84 + 1 GC---------UU---AUGUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCGGCCAUAAACAUAAAAAAUACACAAUAAUAUCAGUGGGAGAGC--------- ((---------((---...(((........((((.(((((((.....))))))).))))..............(((..........))))))))))--------- ( -22.20) >consensus GC_________UGCUGCUAUCCAACAACAAGUGGACGCCAUUGCCAAGAUGGCCGCCAUAAACAUAAAAAAUU___AAUGCAGCCAGAUCGCAAGCACGAAAGUU ..............................((((..((((((.....))))))..)))).............................................. (-12.78 = -12.78 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:02 2006