| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,780,125 – 3,780,239 |
| Length | 114 |
| Max. P | 0.509388 |
| Location | 3,780,125 – 3,780,239 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.39 |
| Mean single sequence MFE | -48.28 |
| Consensus MFE | -23.33 |
| Energy contribution | -23.97 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.48 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3780125 114 - 22407834 ACAACACUCCAGGCGGUGGCACACCAGG------ACCGCCGGGUCCUCCAGGACCUCGUCCUAACAUUGCCGCCGCCGCAGCCGCCUCCCUUAGGGCCAACUCCUUUCGCUUGUCCGCCA (((((......((((((((((....(((------((....((((((....)))))).))))).....))))))))))......((((......))))...........).))))...... ( -43.40) >DroGri_CAF1 289424 114 - 1 ACAAUACACCUGGCGGCGGCACACCC---GGCGGUCCACCCGGUGGACC---GCCACGUCCCAGCAUCGCAGCCGCGGCGGCUGCCUCCCGCAGCGCCAGCUCCUUGCGCUUGUCCGCCA ...........(((((((((......---((((((((((...)))))))---)))........((...)).)))((((((.((((.....)))))))).((.....))))..).))))). ( -54.90) >DroEre_CAF1 256903 114 - 1 ACAGCACGCCGGGCGGUGGCACACCAGG------ACCGCCGGGUCCGCCAGGACCACGGCCCAACAUAGCCGCUGCCGCAGCCGCCUCCCUUAAGGCCAGCUCCUUCCGCUUGUCCGCCA (((((..((..(((((((((......((------...(((((((((....))))).))))))......)))))))))))(((.((((......))))..)))......)).)))...... ( -47.00) >DroYak_CAF1 260888 114 - 1 ACAACACACCAGGCGGUGGCACACCAGG------ACCACCGGGUCCUCCAGGACCACGGCCCAACAUGGCCGCUGCCGCAGCGGCCUCCCUUAAAGCCAACUCCUUGCGCUUGUCCGCCA ...........(((((.(((.((..(((------(...((((((((....))))).)))........((((((((...))))))))...............)))))).)))...))))). ( -48.70) >DroAna_CAF1 273026 117 - 1 AGAGCACCCCUGGUGGUGGCACUCCCGGU---GGUGCCCCGGGUCCUCCAGGACCACGACCCAACAUGGCGGCCGCGGCUGCUGCUUCCCGGAGAGCCAGCUCCUUCCGUUUGUCCGCCA ...(((((.((((..(.....)..)))).---)))))..(((((((....))))).))........(((((((.((((..(((((((......))).)))).....))))..).)))))) ( -48.30) >DroPer_CAF1 269005 111 - 1 ACAGGACACCGGGUGGCGGACCUUGUGG------ACCGCCCGGCGGACC---ACCGCGUCCCAGCAUCGCCGCAGCAGCGGCCGCCUCCCUUAGGGCCAACUCCUUUCGCUUGUCGGCCA ..........(((.(((((((...((((------.((((...)))).))---))...)))).......(((((....))))).))).)))....((((.((...........)).)))). ( -47.40) >consensus ACAACACACCAGGCGGUGGCACACCAGG______ACCGCCGGGUCCUCCAGGACCACGUCCCAACAUCGCCGCCGCCGCAGCCGCCUCCCUUAGGGCCAACUCCUUCCGCUUGUCCGCCA ...........(((((.(((.....................(((((....))))).............((.((....)).)).((((......))))...........)))...))))). (-23.33 = -23.97 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:01 2006