Locus 1411

Sequence ID 2L_DroMel_CAF1
Location 3,775,894 – 3,775,993
Length 99
Max. P 0.606736
window2302

overview

Window 2

Location 3,775,894 – 3,775,993
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 91.80
Mean single sequence MFE -21.97
Consensus MFE -17.59
Energy contribution -18.45
Covariance contribution 0.86
Combinations/Pair 1.05
Mean z-score -2.30
Structure conservation index 0.80
SVM decision value 0.15
SVM RNA-class probability 0.606736
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3775894 99 - 22407834
AACCUUUUAUUUCGGACCUUAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACA
............((((........))))((((((((((.....((....))....)))))...((((.......))))..))))).............. ( -22.40)
>DroSec_CAF1 245631 97 - 1
AACCUCCU-UUUCGGACCUUAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAAC-
........-...((((........))))((((((((((.....((....))....)))))...((((.......))))..))))).............- ( -22.40)
>DroSim_CAF1 244953 98 - 1
AACCUUCC-UUUCGGACCUUAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUCCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACA
........-...((((........))))(((((((((..((..((....)).))..))))...((((.......))))..))))).............. ( -19.20)
>DroEre_CAF1 252783 98 - 1
AACCUUCA-UUUCGGACCUUAUCUUCCGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACA
........-...((((........))))((((((((((.....((....))....)))))...((((.......))))..))))).............. ( -24.60)
>DroYak_CAF1 256643 98 - 1
AACCUUCG-UUUCGGACCUUAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACA
.......(-(((((((........))))((((((((((.....((....))....)))))...((((.......))))..))))).........)))). ( -23.70)
>DroAna_CAF1 268425 95 - 1
UACCUCCC-AGCCGGACCCUAUCUUCUGGGCCUAGUGGU-AC--GGUCCCUAUAUGCACUUCAGUUUGCUUACAAAACACCAGCGAACAAAAACAAACA
........-....(((((.((((..(((....))).)))-).--)))))..............(((((((...........)))))))........... ( -19.50)
>consensus
AACCUUCC_UUUCGGACCUUAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACA
............((((........))))((((((((((.....((....))....)))))...((((.......))))..))))).............. (-17.59 = -18.45 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:00 2006