Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,775,717 – 3,775,822 |
Length | 105 |
Max. P | 0.676762 |
Location | 3,775,717 – 3,775,822 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -22.68 |
Consensus MFE | -20.05 |
Energy contribution | -20.80 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.88 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3775717 105 + 22407834 UCCCGAAGGGAUUAAAACACACAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU ....((((((((..(((.....((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... ( -23.30) >DroSec_CAF1 245466 103 + 1 UCCCGAAGGGAUUAAAAC--ACAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU ....((((((((..(((.--..((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... ( -24.60) >DroSim_CAF1 244779 103 + 1 UCCCGAAGGGAUUAAAAC--GCAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU ....((((((((..(((.--..((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... ( -24.60) >DroYak_CAF1 256482 94 + 1 UCCCGAAGGGAUUAAAA---ACUGACUGGCCAAGAGCAUUCCGCACUGCAAAGCCGAUCUCGGCGACCCUUUUUCCAUACCUUCACCCGUAAUACCC-------- ....(((((........---........((..((.((.....)).))))...((((....))))...............))))).............-------- ( -18.20) >consensus UCCCGAAGGGAUUAAAAC__ACAGCCUGGCCAAGAGCAUUCCGCACUGCACAGCGGAUCUCGGCGACCCUUUUUCCAUUCCUUCACCCGUAAUACCCAUACCCAU ....((((((((..(((.....((..(.(((..(((...(((((........))))).)))))).)..)).)))..))))))))..................... (-20.05 = -20.80 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:59 2006