Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 430,695 – 430,812 |
Length | 117 |
Max. P | 0.620272 |
Location | 430,695 – 430,812 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.23 |
Mean single sequence MFE | -22.85 |
Consensus MFE | -17.30 |
Energy contribution | -16.62 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.17 |
Mean z-score | -1.64 |
Structure conservation index | 0.76 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 430695 117 - 22407834 CUUGUAGUUUACAUUGUAUAUUACAAUUACAUU---AUGAGUUCUAUCUUUUGGCAUUCACUUUUUGCCAAACUAUGGCGGAAGCCUAUUGGAUUCAAAUCUAGCUUUCAGUAUCCCUGC ...((((..(((((((((...))))))......---.(((((((.....(((((((.........)))))))....(((....)))....))))))).............)))...)))) ( -27.00) >DroSec_CAF1 8188 117 - 1 CUUGUAGUUUAUUUACUAUCUUAUUCCUACAUU---AUUAGUUCUAUCUUUUGGCAUUCACUUUUUGCAAAACUAUGGCGGAAGCCUGUUAGAUUCGAAUCUAGCUUUCAGUAUCCCUGC ...(((((((....((((...............---..))))...........(((.........))).)))))))(((....))).(((((((....)))))))...(((.....))). ( -19.93) >DroSim_CAF1 7174 117 - 1 CCUGUAGUUUAUUUACUAUCUUAUUCCUACAUU---AUAAGGUUUAUCAUUUGGCAUUCACCUUUUGCAAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCUAGCUUCCAGUAUCCCUGC .(((((((((.......(((((((.........---)))))))..........(((.........))).))))))))).((((((....(((((....)))))))))))........... ( -22.90) >DroEre_CAF1 7961 120 - 1 CUUGCAGUUUAUUUACUAUCUUAUUCUAACAUUAUUAUUAGUUUUAUCUUUCGGCAUUCACUUUUUGCGAAAUUGUGGCGGUAGCCUGUUAGAUUCAAAUCUAGCUUUCAGUAUCCCUGC ...((((......((((....................................(((.........)))((((....(((....))).(((((((....)))))))))))))))...)))) ( -19.30) >DroYak_CAF1 7596 120 - 1 CUUGUAGUUUACUUGCAAUCUUAUUCUAACAUUAUUAUUAGAUCUAUCUUUCGGCAUUCACUUUUUGCUAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCCAGCUCUCAGCAUCCCUGC ...(((((((..............(((((........)))))..........((((.........)))))))))))(((....))).(((((((....))))))).....(((....))) ( -25.10) >consensus CUUGUAGUUUAUUUACUAUCUUAUUCUUACAUU___AUUAGUUCUAUCUUUUGGCAUUCACUUUUUGCAAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCUAGCUUUCAGUAUCCCUGC ...(((((((..............................(......).....(((.........))).)))))))(((....))).(((((((....)))))))...(((.....))). (-17.30 = -16.62 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:15 2006