Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,774,638 – 3,774,738 |
Length | 100 |
Max. P | 0.994958 |
Location | 3,774,638 – 3,774,738 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -18.76 |
Consensus MFE | -15.96 |
Energy contribution | -16.80 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.85 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.994958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3774638 100 + 22407834 --AAGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGAAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAAAUAA --(((((((((((((((((.(......).))))))..................((((...((((......)))).))))))))))).))))........... ( -13.70) >DroSec_CAF1 244410 99 + 1 ---UGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAAAUAA ---((((((((.(((.....)))((((((((......))))))))))))))))........(((((..((....))..)))))................... ( -19.60) >DroSim_CAF1 243685 102 + 1 UCAUGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAACUAA ..(((((((((.(((.....)))((((((((......))))))))))))))))).......(((((..((....))..)))))................... ( -21.10) >DroEre_CAF1 251559 101 + 1 UCAUGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUUAUACUCGUACUGCUGCUACUCUUAUUAGCAUAAACUCUCCC-AUAAAUAA ..(((((((((.(((.....)))((((((((......)))))))))))))))))...........(((((.......)))))...........-........ ( -18.50) >DroYak_CAF1 255359 102 + 1 UCAUGAUUUGUGUGCCAUUAGCAUAAUCCAAUUGCAUUAGGAUUAAUAAAUCAUAGUCUUGGUGCUGCUACACCCAUUAGCAUAAACUCUACCAAUAAAUAA ...((..((((((.......))))))..))...((((((((((((........))))))))))))(((((.......))))).................... ( -20.90) >consensus UCAUGAUUUGUGUGCAAUUAGCAUAAUCCAAUUGCAUUUGGAUUAAUAAAUCAUAGUCUUAGUGCUUCUACACUUAUUAGCAUAAACUCUUCCAAUAAAUAA ..(((((((((.(((.....)))((((((((......))))))))))))))))).......(((((............)))))................... (-15.96 = -16.80 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:58 2006