Locus 1408

Sequence ID 2L_DroMel_CAF1
Location 3,768,184 – 3,768,278
Length 94
Max. P 0.599783
window2299

overview

Window 9

Location 3,768,184 – 3,768,278
Length 94
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.33
Mean single sequence MFE -25.80
Consensus MFE -19.04
Energy contribution -19.93
Covariance contribution 0.89
Combinations/Pair 1.05
Mean z-score -1.10
Structure conservation index 0.74
SVM decision value 0.13
SVM RNA-class probability 0.599783
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3768184 94 - 22407834
-----UCG--U-CC---CCUCUAAUCCAUGAAGUAGCUAAAACUGCGACGCUUAAGUCGGCUGCUCAGAGCCGAUCUGGAGCGUGUCUUUAACCUUAGUUACCCG
-----...--.-..---...............((((((((((..((.((((((.((((((((......)))))).)).))))))))..))....))))))))... ( -25.90)
>DroVir_CAF1 305250 92 - 1
-----ACG--U-U-----AACUAAUCCAUAAAGUAGCUAAAGCUACGACGCUUGCGUCGGCUACUGAGCGCCGAUCUGGAGCGUGUUUUUAACCUUAGUUACCCG
-----...--.-(-----((((((........(((((....))))).((((((..((((((........))))))...))))))..........))))))).... ( -28.50)
>DroGri_CAF1 276755 102 - 1
GUUGAAGG--UUU-AGAAAACUAAUCCAUGUAGUAGCUAAAACUUCGACGCUUCCGUCGGCUACUCAGCGCCGAUCUCGAGCGUGUUUUUAACCUUAGUUACCCG
....((((--((.-.((((((.......((.((((((........(((((....)))))))))))))((((((....)).))))))))))))))))......... ( -28.40)
>DroWil_CAF1 372030 99 - 1
-----UAACGA-UUUGAAUUUCAAUCCAUGAAAUAGCUAAAACUGCGACGCUUUCGUCGGCUACCCAAAGCCGAUCUGGAGCGUGUUUUUAACCUUAGUUACCCA
-----......-.....((((((.....))))))((((((((..((.(((((((.(((((((......)))))))..)))))))))..))....))))))..... ( -24.20)
>DroMoj_CAF1 327952 92 - 1
-----ACG--U-U-----AGCUAAUCCAUGUAGUAGCUAAAACUGCGACGCUUGCGUCGACUGCUGAGCGCCGAACGGGAGCGUGUCUUAAUCCUUAGUUACCCG
-----...--.-(-----((((((....((((((.......))))))((((((.(((((..(((...))).)).))).))))))..........))))))).... ( -23.60)
>DroAna_CAF1 260247 92 - 1
-----UCU--U-GG-----CCUAAUCCAUGAAAUAGCUAAAACUGCGACGCUUGAGCCGGCUGCUCAGAGCCGAUCUGGAGCGUGUCUUUAACCUUAGUUACCCG
-----((.--(-((-----......))).))..(((((((((..((.((((((.((.(((((......)))))..)).))))))))..))....))))))).... ( -24.20)
>consensus
_____ACG__U_U_____AACUAAUCCAUGAAGUAGCUAAAACUGCGACGCUUGCGUCGGCUACUCAGAGCCGAUCUGGAGCGUGUCUUUAACCUUAGUUACCCG
................................((((((((....((.((((((..((((((........))))))...))))))))........))))))))... (-19.04 = -19.93 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:57 2006