Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,755,673 – 3,755,782 |
Length | 109 |
Max. P | 0.500000 |
Location | 3,755,673 – 3,755,782 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 88.51 |
Mean single sequence MFE | -31.77 |
Consensus MFE | -24.72 |
Energy contribution | -24.87 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.29 |
Mean z-score | -2.23 |
Structure conservation index | 0.78 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3755673 109 + 22407834 CAAGGGCU--AACCUCUCAUGUCAACUUGUUGACUAAGCAAAGUCAGCCCCA-UAUGAGUUAUGAUAUACUCAGCUCUUAAGCAGGAAAAACAAUGAUGAGGGGGAAUUGGU---- .....(((--((((((((((........(((((((......))))))).((.-..(((((........)))))(((....))).))..........))))))))...)))))---- ( -29.70) >DroSec_CAF1 217620 113 + 1 CAAGGGCU--AACCUCUCAUGUCAACUUGUUGACUAAGCAAAGUCAGCCCCA-UAUGAGUUAUGAUUUACUCAGCUCUUAAGCAGGAAAAACAAUGAUGAGGGGGAAUUGGUAUUC .....(((--((((((((((........(((((((......))))))).((.-..(((((........)))))(((....))).))..........))))))))...))))).... ( -30.40) >DroSim_CAF1 224839 114 + 1 CAAGGGCU--AACCUCUCAUGUCAACUUGUUGACUAAGCAAAGUCAGCCCCAUUAUGAGUUAUGAUUUACUCAGCUCUUAAGCAGGAAAAACAAUGAUGAGGGGGAAUUGGUAUUC .....(((--((((((((((........(((((((......))))))).((....(((((........)))))(((....))).))..........))))))))...))))).... ( -30.40) >DroEre_CAF1 232250 103 + 1 CAAGGGCU--AACCUCUCGUGUCGACUUGUUGACUAAGCAAAGUCAGCCCCA-UAUGAGUUAUGAUUUACUCAGCUCCUAAGCAGGAAAAACAAUGAUGAGAGGGG---------- ........--..((((((((........(((((((......))))))).((.-..(((((........)))))(((....))).))..........))))))))..---------- ( -29.30) >DroYak_CAF1 236147 113 + 1 CAAGGGCU--AACCUCUCAUGUCAACUUGUUGACUAAGCAAAGUCAGCCCCA-UAUGAGUUAUGAUUUACUCAGCUCUUAAGCGGGAAAAACAAUGAUGUGGGGGAAUUGGCGUUU .(((.(((--((.(((((((((((....(((((((......)))))))(((.-..(((((........)))))(((....))))))........)))))))))))..))))).))) ( -38.70) >DroAna_CAF1 246846 115 + 1 AAAGGGCCACAACCUCUCGUGUCAACUUGUUGACUAAGCAAAGUUGGCCUUA-UAUGAGUUAUGAUUUACUCAGCUCUUAAAAAGGCAAAACAAUGAUGAAGAGGAAUCGGCUAUC ....((((....((((((((..(((((((((.....))).))))))(((((.-...((((..(((.....))))))).....))))).........))).)))))....))))... ( -32.10) >consensus CAAGGGCU__AACCUCUCAUGUCAACUUGUUGACUAAGCAAAGUCAGCCCCA_UAUGAGUUAUGAUUUACUCAGCUCUUAAGCAGGAAAAACAAUGAUGAGGGGGAAUUGGU_UUC .....(((....((((((((........(((((((......))))))).((....(((((........)))))(((....))).))..........)))))))).....))).... (-24.72 = -24.87 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:56 2006