Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,742,306 – 3,742,402 |
Length | 96 |
Max. P | 0.619626 |
Location | 3,742,306 – 3,742,402 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 95.72 |
Mean single sequence MFE | -20.29 |
Consensus MFE | -19.18 |
Energy contribution | -18.78 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -1.11 |
Structure conservation index | 0.95 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3742306 96 + 22407834 GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAACAAAACGGACAGAAAAAAGCAAACUAA-AAUGCGAAACCUCGAGGCAAUA (((....(((((((.(((((.(((((.....))..(((.....))).....)))))))).....((....))..-.))))))).......))).... ( -19.50) >DroSec_CAF1 204425 95 + 1 GAUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAGAAAGAAGCAAACUAA-AAUGCGAAACCCGGAGGCAAUA ..((((....((((.((((....(((.....)))..)))).))))..-....((((.........(((......-..)))....))))..))))... ( -19.82) >DroSim_CAF1 211561 95 + 1 GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAGAAAGAAGCAAACUAA-AAUGCGAAACCCGGAGGCAAUA (((.((((((((((.(((.....(((((.......(((...((....-...))..))).....)))))...)))-.)))))))...))).))).... ( -21.10) >DroEre_CAF1 218462 95 + 1 GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAAAAACAAGCAAACUAA-AAUGCGAAACCCCGAGGCAAUA ..((((....((((.((((....(((.....)))..)))).))))..-....((((.........(((......-..))).....)))).))))... ( -19.84) >DroYak_CAF1 222294 96 + 1 GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA-AAAACGGGCAAAAAUAAGCAAACUAAAAAUGCGAAACCCCGAGGCAAUA (((....(((((((.((......((((((((....(((...((....-...))..)))..)))))))).....)).))))))).......))).... ( -21.20) >consensus GCUGCUGUUCGCAUAUUGUCGCGUGUUUAUUACAAUGCAAAGUGCAA_AAAACGGGCAGAAAGAAGCAAACUAA_AAUGCGAAACCCCGAGGCAAUA ..((((.(((((((.(((((.(((((.....))..(((.....))).....)))))))).....((....))....))))))).......))))... (-19.18 = -18.78 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:47 2006