Locus 1399

Sequence ID 2L_DroMel_CAF1
Location 3,730,079 – 3,730,175
Length 96
Max. P 0.570116
window2284

overview

Window 4

Location 3,730,079 – 3,730,175
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 93.92
Mean single sequence MFE -15.19
Consensus MFE -13.22
Energy contribution -13.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.87
SVM decision value 0.07
SVM RNA-class probability 0.570116
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3730079 96 - 22407834
ACGUAAACGAAACUGGAAAACUCUGCAAAUUGUCGGCAAAAAAUUAAUAGUAACAGAGUUUUUCCAGCACAACAAAAAAGCUCUCAGUGAUUACAA
..((((......(((((((((((((...(((((..(.......)..)))))..))))).))))))))(((................))).)))).. ( -19.19)
>DroSec_CAF1 192442 95 - 1
CCGUCAACGAAACUGGAAAACUCUGCAAAUUGUCGGAAA-AAAUAUAUAGUAACAGAGUUUUUCCAGCACAACAAAAAAGCUCUCAGUGAUUACAA
.((....))...(((((((((((((...(((((......-......)))))..))))).))))))))(((................)))....... ( -15.49)
>DroSim_CAF1 199517 95 - 1
CCGUCAACGAAACUGGAAAACUCUGCAAAUUGUCGGCAA-AAAUAUAUAGUAACAGAGUUUUUCCAGCACAACAAAAAAGCUCUCAGUGAUUACAA
.((....))...(((((((((((((...(((((......-......)))))..))))).))))))))(((................)))....... ( -15.49)
>DroEre_CAF1 206257 94 - 1
CUGCCAACGAAACUGGAAAACUCUGCAAAUUGUCGGCAA-AAAUAUAUAGUAACCGAGUUUUUCCAGCACAACA-AAAAGCUCUCACUGAUUACAA
.((((.((((....(((....))).....)))).)))).-.......((((....((((((((...........-))))))))..))))....... ( -14.20)
>DroYak_CAF1 205370 94 - 1
C-GCAAACGAAACUGGAAAACUCUGCAAAUUGUCGGCAA-AAAUAAAUAGUAACCGAGUUUUUCCAGCACAACAUAAAAGCUCUCAGUGAUUACAA
.-..........((((((((((((((.........))).-.........(....)))).))))))))(((................)))....... ( -11.59)
>consensus
CCGUCAACGAAACUGGAAAACUCUGCAAAUUGUCGGCAA_AAAUAUAUAGUAACAGAGUUUUUCCAGCACAACAAAAAAGCUCUCAGUGAUUACAA
............(((((((((((((...(((((.............)))))..))))).))))))))............................. (-13.22 = -13.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:43 2006