| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,717,039 – 3,717,239 |
| Length | 200 |
| Max. P | 0.690387 |
| Location | 3,717,039 – 3,717,159 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.11 |
| Mean single sequence MFE | -32.37 |
| Consensus MFE | -27.45 |
| Energy contribution | -27.57 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3717039 120 + 22407834 ACAAAGUCACCGGUUUUUGUGUUUUCGUUGACGCCCAGGAAGUAUGAUUUCGAAUCAUCGAGCUUCUCUACGAUUGCGUCAAACUCCUGUUUAGUUUUUAUAGAGGCUAGGUGACCUCCC .....((((((((..(((((((..((((.(((.....)(((((.((((........)))).))))))).))))..))).))))..))....(((((((....)))))))))))))..... ( -33.00) >DroSec_CAF1 179339 120 + 1 ACAAAGUCACCGAUUUUUGUGCGAUCGUUGAUGCCCAGGAAGUAUUUCUUCGAACUAUCGAGCUUUUCUACGAUUGCAUCAAACUCCUGUUUAUUUUUUAUAGAGGCUAGGUGACCUCCC .....((((((....(((((((((((((.((.((.(..((((.....))))((....))).))...)).))))))))).))))..(((.(.((.....)).).)))...))))))..... ( -32.80) >DroSim_CAF1 188218 120 + 1 ACAAAGUCCCCGAUUUUUGUGCGAUCGUUGAUGCCCAGGAAGUAUUUCUUCGAACUAUCGAGUUUUUCGACGAUUGCAUCAAACUCCUGUUUAUUUUUUAUAGAGGCUAGGUGACCUCCC .....(((.((....((((((((((((((((.......((((.....))))(((((....))))).)))))))))))).))))..(((.(.((.....)).).)))...)).)))..... ( -31.30) >consensus ACAAAGUCACCGAUUUUUGUGCGAUCGUUGAUGCCCAGGAAGUAUUUCUUCGAACUAUCGAGCUUUUCUACGAUUGCAUCAAACUCCUGUUUAUUUUUUAUAGAGGCUAGGUGACCUCCC .....((((((....(((((((((((((.((.((.(..((((.....))))((....))).))...)).))))))))).))))(((.(((.........))))))....))))))..... (-27.45 = -27.57 + 0.12)
| Location | 3,717,119 – 3,717,239 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -31.41 |
| Energy contribution | -31.30 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3717119 120 - 22407834 AAGAUAGGCGAUAGAUAUUUUUACAUCGAAGAAGAUGUUGAGCUAAAUUGGCUGGAUGCUCAGGCCAAAUGUCGUCGAAUGGGAGGUCACCUAGCCUCUAUAAAAACUAAACAGGAGUUU ......(((((((.....(((.(((((......))))).))).....((((((.(.....).)))))).))))))).....((((((......))))))....(((((.......))))) ( -30.30) >DroSec_CAF1 179419 120 - 1 AAGAUAGGCGAUAGAUAUUUUCACAUCGAAGAAGAUGUUGAGCUAAAUUGGCUGGAUGCUCAGGCCAGCUGUCGUCGAAUGGGAGGUCACCUAGCCUCUAUAAAAAAUAAACAGGAGUUU ......((((((((.....((((((((......)))).)))).....((((((.(.....).)))))))))))))).....((((((......))))))..................... ( -33.00) >DroSim_CAF1 188298 120 - 1 AAGAUUGGCGAUAGAUAUUUCCACAUCGAAGAAGAUGUUGAGCUAAAUUGGCUGGAUGCUCAGGCCAGCUGUCGUCGAAUGGGAGGUCACCUAGCCUCUAUAAAAAAUAAACAGGAGUUU ....((((((((((....(((.(((((......))))).))).....((((((.(.....).))))))))))))))))...((((((......))))))..................... ( -35.00) >consensus AAGAUAGGCGAUAGAUAUUUUCACAUCGAAGAAGAUGUUGAGCUAAAUUGGCUGGAUGCUCAGGCCAGCUGUCGUCGAAUGGGAGGUCACCUAGCCUCUAUAAAAAAUAAACAGGAGUUU ......((((((((....(((.(((((......))))).))).....((((((.(.....).)))))))))))))).....((((((......))))))..................... (-31.41 = -31.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:38 2006