Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,716,356 – 3,716,448 |
Length | 92 |
Max. P | 0.640806 |
Location | 3,716,356 – 3,716,448 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 81.62 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -18.07 |
Energy contribution | -18.07 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.60 |
Structure conservation index | 0.69 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3716356 92 - 22407834 GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGGGGGAGAUACAAGUAAAUGGAGUACAAA ...((((.......))))((((.((((.((.((((..((...((((((.....))))))))..)))).))...)))).....))))...... ( -27.80) >DroPse_CAF1 202606 77 - 1 GGCUUGCAGUUUGAGCAUUUCCUUUUGGCUGUCCUUGGCCUGGAGGUGAAACACACUUUGCUGCAAGGCGA--------------AGA-AGA (.((((((((..((((((((((....((((......)))).))))))).......))).)))))))).)..--------------...-... ( -27.61) >DroSim_CAF1 187548 92 - 1 GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGGGGGAGAUACAAGUAAAUAGAUUAAAAA (..((((.......))))..)..((((.((.((((..((...((((((.....))))))))..)))).))...))))............... ( -26.20) >DroEre_CAF1 191820 78 - 1 GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUCGCCUGAAGGUGGAACACACUUUGCUGGAGGGAGA--------------UUAAAAA ...((((.......))))(((((((..(((((..((((((....))))))..)))....))..))))))).--------------....... ( -25.50) >DroYak_CAF1 192253 78 - 1 GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGAGGGAGA--------------UUAUAAA ...((((.......))))(((((((..((.((.....))...((((((.....))))))))..))))))).--------------....... ( -23.10) >DroPer_CAF1 202553 77 - 1 GGCUUGCAGUUUGAGCAUUUCCUUUUGGCUGUCCUUGGCCUGGAGGUGAAACACACUUUGCUGCAAGGCGA--------------AGA-AGA (.((((((((..((((((((((....((((......)))).))))))).......))).)))))))).)..--------------...-... ( -27.61) >consensus GGCCUGCAACUUGAGCAGUUCCUUUUGGCUGUCCUUGGCCUGAAGGUGGAACACACUUUGCUGGAGGGAGA______________UUA_AAA ...((((.......))))((((((..(((.((.....))...((((((.....)))))))))..))))))...................... (-18.07 = -18.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:36 2006