Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,709,611 – 3,709,703 |
Length | 92 |
Max. P | 0.677828 |
Location | 3,709,611 – 3,709,703 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.86 |
Mean single sequence MFE | -22.85 |
Consensus MFE | -16.14 |
Energy contribution | -16.62 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.23 |
Mean z-score | -1.48 |
Structure conservation index | 0.71 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3709611 92 - 22407834 CACUUAUCGCGCUAGCUGAGAAAUCCGGAAACGAUGUGAGGAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGAGUAAUUAGCAAAUACUUA---- ..............(((((....((((....))...(((((((((((((.......)))))))))))))...))....))))).........---- ( -21.90) >DroVir_CAF1 242136 96 - 1 CGCUUAUUGCAUUGGCUGAGAAAUCGGGCAACGAUGUGCGCAGCUGCAUCUCAUCUAUGCAGUUCUUCAAGUAAGUUAAGAUGCAAAACUUAUCAG (((.(((((..(((.((((....)))).)))))))).))).((((((((.......))))))))......(((((((.........)))))))... ( -25.80) >DroSec_CAF1 171900 92 - 1 CACUUAUCGCGCUAGCUGAGAAAUCCGGAAACGAUGUGAGAAGCUGUAUUUCAUCCAUGCAGUUUUUUAAGUGAGUAAUUACCAAAUAUUUA---- (((((((((((......((....))((....)).)))))((((((((((.......)))))))))).))))))...................---- ( -21.90) >DroEre_CAF1 185280 92 - 1 CACUUAUCGCUCUAGCUGAGAAAUCCGGAAACGAUGUGAGAAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGGGUAAAUACGUAAUAUUUA---- ((((((((((.......((....))((....))..))))((((((((((.......)))))))))).))))))...................---- ( -21.80) >DroYak_CAF1 185645 92 - 1 CUCUUAUCGCUCUAGCGGAGAAAUCCGGAAACGAUGUGAGGAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGAGCAACUACUUCAUAUUUA---- ........((((...((((....))))...((....(((((((((((((.......))))))))))))).))))))................---- ( -25.50) >DroMoj_CAF1 249655 88 - 1 CACUCAUCGCUUUGGCUGAGAAAUCGGGCAACGAUGUGCGCAGCUGCAUCUCAACCAUGCAAUUCUUUAAGUAAGUUAAGAGGAAAUA-------- ..(((...((..(((.(((((.((((.....)))).((((....))))))))).))).))....(((.....)))....)))......-------- ( -20.20) >consensus CACUUAUCGCUCUAGCUGAGAAAUCCGGAAACGAUGUGAGAAGCUGUAUAUCAUCCAUGCAGUUUUUUAAGUGAGUAAAUACGAAAUAUUUA____ ((((((((((....)).((....)).(....)))))(((((((((((((.......)))))))))))))))))....................... (-16.14 = -16.62 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:32 2006