Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,700,164 – 3,700,278 |
Length | 114 |
Max. P | 0.988818 |
Location | 3,700,164 – 3,700,278 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 73.61 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -5.54 |
Energy contribution | -9.14 |
Covariance contribution | 3.60 |
Combinations/Pair | 1.20 |
Mean z-score | -2.35 |
Structure conservation index | 0.28 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3700164 114 - 22407834 CUAAUAUUGUCCAGAUCAAAAUAUAUACUUUCAUCCUCGAUGUGUGUAUGUUUUGAAUCAACGUUAAAAAACUGAGGUAAAACUGCCAAUAUCGGGCAAUAAGCUUACCUUUAU ....((((((((.(((((((((((((((...((((...)))).)))))))))))).)))................((((....))))......))))))))............. ( -31.10) >DroSec_CAF1 162777 113 - 1 CUAAUAUUGUACAGAUCAAAAUAUAUACUUUCAUCCUCAAUGUGUGUAUAUUUUGAAUCAACGUUAAA-AACUCUGCUGAAACUACCAACAUCGGGCAAUAAGUUUACCUUUAU ....((((((.(((((((((((((((((...(((.....))).)))))))))))))......((....-.)))))).........((......))))))))............. ( -20.90) >DroSim_CAF1 171568 113 - 1 CUAAUAUUGUACAGAUCAAAAUAUAUACUUUCAUCCUCAAUGUGUGUAUAUUUUGAAUCAACGUUAAA-AACUCUGCUGAAACUACCAACAUCGGGCAAUAAGUUUACCUUUAU ....((((((.(((((((((((((((((...(((.....))).)))))))))))))......((....-.)))))).........((......))))))))............. ( -20.90) >DroEre_CAF1 173490 89 - 1 CUAAUAUGGCCCAGAUCAAAACAAAUACUUUCAUCCUCAAUCUAUCA--------------------UCCACUU---UGAAUCAA--CGUAUUUGGCUAAAAGCUCACCGUUAA .....((((............(((((((.((((..............--------------------.......---))))....--.)))))))((.....))...))))... ( -8.40) >DroYak_CAF1 174931 108 - 1 CUAAUAUUGUGCAGAUCAAACCAACUACUUUCAUCCUCAAUGUGUGAAUACUU------AAAGUUAAACCACUGAAGUGAAACUAGCAAUAUCGGGCUAAAAGCCCAUCUUUAA ...(((((((..((...............((((..(.....)..))))(((((------..(((......))).)))))...)).))))))).((((.....))))........ ( -19.20) >consensus CUAAUAUUGUACAGAUCAAAAUAUAUACUUUCAUCCUCAAUGUGUGUAUAUUUUGAAUCAACGUUAAA_AACUCAGCUGAAACUACCAAUAUCGGGCAAUAAGCUUACCUUUAU ...............(((((((((((((...(((.....))).))))))))))))).....................................((((.....))))........ ( -5.54 = -9.14 + 3.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:27 2006