Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,694,555 – 3,694,675 |
Length | 120 |
Max. P | 0.928152 |
Location | 3,694,555 – 3,694,675 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 64.77 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -14.05 |
Energy contribution | -13.22 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.47 |
Mean z-score | -1.92 |
Structure conservation index | 0.44 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3694555 120 + 22407834 UCCAAAACAGCCGCCGUAUUCAAAUUUCUGGCAAACAUUUAUGUGUGGAUAGUAACUGAACUUUUCAAAACUUCCAGCGCACUUAAUGAAAUCAUUGCCAUUUACUGCAGGCGGUUGUCC ......((((((((((((...(((....((((((.((((..((((((((.(((...(((.....)))..))))))).))))...))))......)))))))))..))).))))))))).. ( -31.90) >DroPse_CAF1 184404 114 + 1 GCCACCGCAGCCGCCAUAAAUGAACCUCACGCAUUCCU--UUCC----AUUGUAGGACCAACUGGGAAAGUUGGCCAUACAGGCCUUAUUUCCAUCUCCAUUUUUGGAAUGUGGAAGUGC (((...((....))........................--....----..((((((.((((((.....)))))))).)))))))..(((((((((.((((....))))..))))))))). ( -31.80) >DroSec_CAF1 157261 120 + 1 UCCAAGACAGCCGCCGUAUUCAAAUUUUCGGCAAGUAUUUAUAUGUGGAUAGUAAAUGAACUUUUCAAAACUUCCAGCGCACUUAAUGAAAUCAUUGCCAUUUACUUCAGGCGGUUGUCC .....(((((((((((....)........(((.............((((.(((...(((.....)))..)))))))........((((....)))))))..........)))))))))). ( -30.40) >DroSim_CAF1 166226 120 + 1 UCCAAGACAGCCGCCGUAUUCAAAUUUUCGGCAAGAAUUUAUAUGUGGAUAGUAACUGAACUUUUCAAAACUUCCAGCGCACUUAAUGAAAUCGUUGCCAUUUGCUGCAGGCGGUUGUCC .....(((((((((((((..(((((....(((((((.(((((.((((((.(((...(((.....)))..))))))...)))....))))).)).)))))))))).))).)))))))))). ( -35.00) >DroEre_CAF1 165003 120 + 1 UCCAUUACAGCCGCCGUAAUCGAACUUUAAGCACGAUUGAAUCCGCGGAUGGUAACUGUACCUAUCAAAACUGCCGAUGCAGGUGAUGACACGAUCGCCAUUUUUUGCAGGCUGUUGUCC ......(((((.(((.((((((..(.....)..)))))).....((((((((..(.(((...(((((...((((....)))).)))))..))).)..)))))...))).))).))))).. ( -32.30) >DroPer_CAF1 184373 114 + 1 GCCACCGCAGCCGCCAUAAAUGAACCUCACGCAUUCCU--UUCC----AUUGUAGGACCAACUGGGAAAGUUGGCCAUACAGGCCUUAUUUCCAUCUCCAUUUUUGGAAUGUGGAAGUGC (((...((....))........................--....----..((((((.((((((.....)))))))).)))))))..(((((((((.((((....))))..))))))))). ( -31.80) >consensus UCCAACACAGCCGCCGUAAUCAAACUUCAGGCAAGCAUUUAUCCGUGGAUAGUAACUGAACCUUUCAAAACUGCCAACGCACGUAAUGAAACCAUCGCCAUUUUCUGCAGGCGGUUGUCC .....((((((((((....................................((....(((.((.....)).)))....))................((........)).)))))))))). (-14.05 = -13.22 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:25 2006