Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 429,217 – 429,307 |
Length | 90 |
Max. P | 0.863629 |
Location | 429,217 – 429,307 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 87.89 |
Mean single sequence MFE | -17.00 |
Consensus MFE | -12.51 |
Energy contribution | -12.55 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.19 |
Structure conservation index | 0.74 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 429217 90 + 22407834 ACACCACAUCCACA------UCAGUGGG--UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA ..((((.((((((.------...)))))--)))))....(((......((((..................)))).....)))................ ( -18.27) >DroSec_CAF1 6723 96 + 1 ACACCACAUCCACAUCAACAUCAGUGGG--UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA ..((((.((((((..........)))))--)))))....(((......((((..................)))).....)))................ ( -17.37) >DroSim_CAF1 5709 96 + 1 ACACCACAUCCACAUCAACAUCAGUGGG--UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA ..((((.((((((..........)))))--)))))....(((......((((..................)))).....)))................ ( -17.37) >DroEre_CAF1 6470 83 + 1 ACA------------ACACAUCAGUGGG--CUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCC-UCUCGCCAUAUCAUCAUCGCCA ...------------.(((....)))((--((((((...........)))))..................((((.-....))))..........))). ( -14.40) >DroYak_CAF1 6074 97 + 1 ACACCACA-CCACAUACACACCAGCGGGUACUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCGGGCCCCCUCGCCAUAUCAUCAUCGCCA ........-..............(((((((....)))))))..............................(((......)))............... ( -17.60) >consensus ACACCACAUCCACAUAAACAUCAGUGGG__UUGGUACCCGCGUCAUAUGCCAACUUAUUCAAUAAAUUCCUGGCCUCCUCGCCAUAUCAUCAUCGCCA .......................((((....(((((...(((......((((..................)))).....)))..)))))...)))).. (-12.51 = -12.55 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:11 2006