Locus 1389

Sequence ID 2L_DroMel_CAF1
Location 3,690,379 – 3,690,469
Length 90
Max. P 0.512789
window2267

overview

Window 7

Location 3,690,379 – 3,690,469
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -37.98
Consensus MFE -23.11
Energy contribution -22.73
Covariance contribution -0.38
Combinations/Pair 1.33
Mean z-score -1.64
Structure conservation index 0.61
SVM decision value -0.04
SVM RNA-class probability 0.512789
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3690379 90 - 22407834
CGGGAAAAGCGGCUGAUGGGUAAACUGGGCGGCCAAGUGGGGUGGCAGGAAAAGCGGUGG---GUGGUUGGCGCUCCGCUGGGCCGCUGCUGC
........(((((....((.....)).(((((((.(((((((((.(((.....((.....---))..))).))))))))).)))))))))))) ( -39.90)
>DroVir_CAF1 220378 90 - 1
CGGAAAAAGCGGCUGGUGCGUAAACUGAGCCGCCAGAUGCGGCGGCAGGAAAAGCGGUGG---AUGAUUGGCGCUGCGCUGAGCCGCUGCGGC
........(((((((((......))).))))))....(((((((((.((....((((((.---........)))))).))..))))))))).. ( -39.50)
>DroPse_CAF1 178636 93 - 1
CGGAAAGAGCGGCUGAUGCGAGAACUGCGCCGCCAGAUGGGGCGGCAGGAAGAGCGGUGGAUGGUGGUUCGUGCCACGUUGUGCCGCCGCCGC
........(((((....((.....(((((((.((....))))).)))).....))(((((...(((((....)))))......)))))))))) ( -41.30)
>DroGri_CAF1 192640 85 - 1
CGGAAAGAGCGGCUGAUGCGAGAACUGAGCAGCCAGAUGUGGCGGCAGGAAAAGCGGUGG---AUGGUUUGCGCUGCGCUGAGCUGCC-----
........((((((.(.((.....(((....((((....))))..))).....((((((.---(.....).))))))))).)))))).----- ( -30.70)
>DroYak_CAF1 163272 90 - 1
CGGGAAAAGCGGCUGAUGGCUGAACUGGGCGGCCAAGUGGGGUGGCAGGAAAAGCGGUGG---GUGGUUGGCGCUACGCUGGGCCGCCGCUGC
........(((((...((((((.......)))))).....((((((......((((...(---(((.....)))).))))..))))))))))) ( -37.00)
>DroMoj_CAF1 219426 90 - 1
CGGAAAGAGCGGCUGAUGCGAAAACUGAGCCGCCAGAUGCGGCGGCAGGAAUAACGGUGG---AUGAUUCGCGUUCCGCUGAGCCGCUGCCGC
(((....(((((((.(.((.........((((((......)))))).(((((....((((---(...))))))))))))).))))))).))). ( -39.50)
>consensus
CGGAAAAAGCGGCUGAUGCGAAAACUGAGCCGCCAGAUGGGGCGGCAGGAAAAGCGGUGG___AUGGUUGGCGCUACGCUGAGCCGCCGCCGC
........((((((.(.(((....((..((.(((......))).)).))...((((...............)))).)))).))))))...... (-23.11 = -22.73 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:22 2006